RNA id: AMCG00011202


Basic Information

Item Value
RNA id AMCG00011202
length 1404
RNA type mRNA
GC content 0.61
exon number 7
gene id AMCG00011202
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13851441 ~ 13854844 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTGGCTGGTGGTGCAGCTGCATCCTGACACTGACCTGCTTGTCTGCTGTCGTTGAGTCCAATTCCGCTCAGGTCGACAGCGCTCCGCCCTCTAAAATAGccaTAGTGGGCGCTGGGATCGGAGGCACAGCCACGGCTCACTTCCTCCGGCAGCACTTCGGGCCGGAGGTGCGCATCGATGTGTACGAGAAGGCCACGGTGGGGGGGCGGCTGGCCACCGTTACTGTGAATCACCAGGAGTACGAGTCCGGTGGCTCCATCATCCACTCCCTCAATCTCCACATGCAGGACTTTGTGAAGCAACTGGGGCTCAAGTACCGTAAGAGCGTGGCGGGGAAGACGGCTGTGTTCAATGGGGAAGAGTTCATCCTGGAGGAGACAGACTGGTACCTGCTGGACCTGTTTCGCCTGTGGTGGCGATACGGCTTCAGCTTCATCCGCCTGCAGATGTGGGTGGAGGAGGTGATGGAGAAGTTCATGAGGATCTATAAGTACCAGGCGCATGGCTACGCATTCAGCTCTGTAGAGGAGCTGCTGCAGTCCCTGGGGGGCTCTGCCTTCATCAACATGACGCGGCGCTCAGTCTCGGAATCGCTGCTTGAGCTGGGCGTGTCTCAGCGCTTCATCGACGAGGTGGTGGCCGGCGTCATGAGGGTCAACTATGGCCAGTCTGTCAGCATCCCTGCCTTCGTAGGAGCCGTGTCTCTGGCCGGAGCCCAGGCCAATCTGTGGGCAGTGGAAGGCGGGAACAAGTTGGTGTGCTCTGGCTTACTGAATGCAGCCAAGGCTAATCTAATAAAAGCGAAAGTCACAACTATCTCCCCTCAAGCAGCAGGCGACGCGTTCCAGTACCGGCTGAGTTACTCGCCCGTGGACGAGAAGGGGACGGAGGAGGGTGCGGCGGCCGCGGCGGAGCTGTACGACATTGTGGTGGTGGCGACGCCTCTGCAGGTGAACGGCACAGGCCTGTCCTTCGAGGGCTTCGACCCGCCCCTGCCAGAAATCGGGGGCTCCTACCACCACACGGTGGCATCCATCGTGCACGGCTACCTCAACTGCTCCTACTTTGGCTTCGCGGACCCCAAGCTATTCCCCTTCGCCAGCGTGCTGACCACCGATACACCCGGGCTCTTCTTCAACAGCGCCGCCAGCATCTGCCCCGTCAACATCAGCGCCGCCTTCCGCAGGAAGCAGCCCCAGGAGGCGGCCGTGTGGAAGGTGttctcccagcagcccctggACAAGAAGGAACTGAAGAAGCTGTTCAAGTCCTACTACTCCGTCCAGGCCACCGACTGGCAGGCCTACCCGCAGTACGGCACCGCGCCTGGCCTGCCCCCGCTCCTGCTGCACGACGGCCTCTATTACCTCAATGGCGTGGATATCCTCACCTCAACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131220 lncRNA upstream 172061 13665947 ~ 13679380 (+) True G104923
TU131222 lncRNA upstream 172061 13665947 ~ 13679380 (+) False G104923
TU131203 lncRNA upstream 296385 13553401 ~ 13555056 (+) True G104910
TU131175 lncRNA upstream 622025 13186948 ~ 13229416 (+) True G104883
TU131100 lncRNA upstream 832377 13018792 ~ 13019064 (+) True G104835
TU131310 lncRNA downstream 2987 13857831 ~ 13858192 (+) True G104979
TU131311 lncRNA downstream 3807 13858651 ~ 13858982 (+) True G104980
TU131317 lncRNA downstream 13558 13868402 ~ 13876178 (+) False AMCG00011204
TU131374 lncRNA downstream 136111 13990955 ~ 13992845 (+) True AMCG00011210
TU131391 lncRNA downstream 158277 14013121 ~ 14061024 (+) False AMCG00011209
AMCG00011197 mRNA upstream 109434 13722539 ~ 13742007 (+) True AMCG00011197
AMCG00011196 mRNA upstream 129780 13707524 ~ 13721661 (+) True AMCG00011196
AMCG00011199 mRNA upstream 154733 13691836 ~ 13696708 (+) True AMCG00011199
AMCG00011195 mRNA upstream 160078 13687256 ~ 13691363 (+) True AMCG00011195
AMCG00011193 mRNA upstream 173850 13660924 ~ 13677591 (+) True AMCG00011193
AMCG00011201 mRNA downstream 9771 13864615 ~ 13867345 (+) True AMCG00011201
AMCG00011204 mRNA downstream 13493 13868337 ~ 13878282 (+) True AMCG00011204
AMCG00011205 mRNA downstream 36910 13891754 ~ 13900038 (+) True AMCG00011205
AMCG00011206 mRNA downstream 54888 13909732 ~ 13914186 (+) True AMCG00011206
AMCG00011210 mRNA downstream 130821 13985665 ~ 13991927 (+) False AMCG00011210
TU131073 other upstream 908359 12942380 ~ 12943082 (+) True G104815
TU130962 other upstream 1232386 12610129 ~ 12619055 (+) True G104719
TU130924 other upstream 1324410 12525360 ~ 12527031 (+) True G104694
TU130727 other upstream 1784104 12066494 ~ 12067337 (+) True G104550
TU130558 other upstream 2007352 11842129 ~ 11844089 (+) True G104435
TU131514 other downstream 764846 14619690 ~ 14620534 (+) True G105139
TU131632 other downstream 1465936 15320780 ~ 15322425 (+) False AMCG00011241
TU131792 other downstream 1995802 15850646 ~ 15852389 (+) True AMCG00011253
TU131793 other downstream 1998920 15853764 ~ 15855784 (+) True AMCG00011252
TU131803 other downstream 2108496 15963340 ~ 15984079 (+) True G105373

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000040_03872593_03884618.mRNA True 2038 mRNA 0.47 6 CI01000040 3872094 ~ 3884666 (-)