RNA id: TU168052



Basic Information


Item Value
RNA id TU168052
length 1011
RNA type TUCP
GC content 0.58
exon number 4
gene id AMCG00012006
representative False

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8378333 ~ 8397041 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGCAGCTTTTCAGTTAACACTAGAGAGCACTGCTGGAGTCTGCTGACTACCTGCACTGCTCACCTGGCTGTGCAGAGgcagaaagacacagagactTGACACGAGACTCACTCAGGGCCTGAGATAAGAGAGAGAATCCAGGCAGACAGGGTGTTGACTGTGGAGCTATTTTTGGGGGGCTGTGGGAGGACTGAGTGGGCAGCACCAGGACAGTAACTGTGGGAGAGGGGGCTCACCTGGACCCAGGCTTCTCTTCTGCCACCTGTGGCTACAGCACTGAAAATGCAGAATCCGACGTCCCCTGGTGGCACTCTCTCTGAGGAGCAGTTCCAGTGCTCCATATGTCTGGACATATTTACCGAACCAGTCTCCACTCCCTGTGGGCACAGCTTCTGCATGGCCTGCCTCCGAGGCTACTGGGACCACAGCAAGGTGTGCCAGTGTCCCATGTGCAAGAAAGTGTTTCCCGTGCGCCCCGACCTCAGCATCAACCGGGTCCTGGCGGAGATCGCCGAGCAGTTTCAGAATGTGAGCGTGGGCGGTCCGGCGGGCAGCTTCGCCCGGGCAGGGGATGTGCCCTGCGACGCCTGCATCGGGCGGAAGGTGAGGGCGGTGAAGTCCTGCATGTCCTGCCAGGCATCCTTCTGCGAGAGCCACATCCGAAACCACCGCAAGGTCCAGGCACTCCTGAGCCACAAGCTGGTGGAGCCCATCTACAAGCTGCAGGAGAAGATTTGCCAGAAGCACCAGAGGCTGATGGAGGTGTACTGCCGCAGTGACCACACCTGCGTCTGCGCACTGTGCGTGGAGTCGGGCCACAAGATGCATGACATCGTCTCCACAGACAGAGAGTGGAAGAAGAAGATGGGTCAGCTGGGAAAGAGAAAGTCAGAGGTGAGACAGCTGATCAAGGACAGAGTGAAGAAGCTGGAGGAGATCAGGTACTCCATGAAGATCATCAAAAGCTCTGCCCAGAAGGAGATGGAAGAGAGCTGGCAGGTGTACGAGGAN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU168042 lncRNA upstream 106533 8276375 ~ 8276580 (+) True G133947
TU168009 lncRNA upstream 186084 8196819 ~ 8197029 (+) True G133921
TU167885 lncRNA upstream 258414 8120899 ~ 8124699 (+) True G133833
TU167877 lncRNA upstream 265864 8062593 ~ 8117249 (+) True G133825
TU167884 lncRNA upstream 282676 8079755 ~ 8100437 (+) True G133832
TU168067 lncRNA downstream 61946 8449043 ~ 8578268 (+) True G133961
TU168143 lncRNA downstream 232410 8619507 ~ 8623220 (+) True G134018
TU168146 lncRNA downstream 237121 8624218 ~ 8627183 (+) True G134019
TU168166 lncRNA downstream 312314 8699411 ~ 8700618 (+) True G134033
TU168167 lncRNA downstream 315252 8702349 ~ 8702598 (+) True G134034
AMCG00011993 mRNA upstream 345432 8029486 ~ 8037681 (+) True AMCG00011993
AMCG00011994 mRNA upstream 358052 8020804 ~ 8025061 (+) True AMCG00011994
AMCG00011992 mRNA upstream 366226 7999228 ~ 8016887 (+) True AMCG00011992
AMCG00011986 mRNA upstream 407016 7970457 ~ 7976097 (+) True AMCG00011986
AMCG00011985 mRNA upstream 428100 7931795 ~ 7955013 (+) True AMCG00011985
AMCG00012005 mRNA downstream 10929 8398026 ~ 8401203 (+) True AMCG00012005
AMCG00012004 mRNA downstream 38923 8426020 ~ 8428680 (+) True AMCG00012004
AMCG00012007 mRNA downstream 77108 8464205 ~ 8468828 (+) True AMCG00012007
AMCG00012008 mRNA downstream 122914 8510011 ~ 8520648 (+) True AMCG00012008
AMCG00012010 mRNA downstream 200033 8587130 ~ 8587981 (+) True AMCG00012010
TU167873 other upstream 328092 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 350504 8028063 ~ 8032609 (+) False AMCG00011993
TU167842 other upstream 412195 7960698 ~ 7970918 (+) False AMCG00011986
TU167660 other upstream 816767 7565387 ~ 7566346 (+) False AMCG00011971
TU167659 other upstream 817085 7564808 ~ 7566028 (+) False AMCG00011971
TU168076 other downstream 130917 8518014 ~ 8519026 (+) False AMCG00012008
TU168082 other downstream 173945 8561042 ~ 8563214 (+) True G133974
TU168537 other downstream 1264252 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 1269260 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 1465793 9852890 ~ 9867143 (+) True G134338

Expression Profile