RNA id: TU168076



Basic Information


Item Value
RNA id TU168076
length 742
RNA type TUCP
GC content 0.52
exon number 3
gene id AMCG00012008
representative False

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8510011 ~ 8520648 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAGAGAGACGCTCACTGAGCCCATCCACCAGTATGAGGAAGGGAAGGAGACAGAGGGTTTTGAATACAAGGGCAGGGTGAAGATGCTCAAACTGGAGCTGGAGGACGGTGATGTTTCCCTGCTGCTCAGAGAGGTCAGGATCTCCGATGCAGGCGTCTACACCTGTCACGTCAAGACTGGAGATCAGGAACACTTGGAGTCTCAACTCACATTAGTGGTTAGACATCAGTTAGAGCTACTGGTTCCAACAGCCCCACTGGTTGTCAATGAGGGCAGCGACATTGTCCTCCCCTGCCAGCTCTCGCCCAGTGTGAATGCATCAGCCAGGGAGGTGAGGTGGTTCAGAGAGACTCTCCTCGATCCCATCTACCTGTATAAAGACTGGGAGGAAACAGAGGGAGCAGAACACAAGGGCAGAGTGAGGCTGATCCAAAGGGAGCTGGGGGTCGGCAACATTTCTCTGATGCTAATGGATGTCAAGATCTCAGATGATGGAGTCTACCGGTGTAATGTCATCTCAAAAGAGCAGTACAATGTAGAGTCCAAACTACATTTGGTGGTGATGAGTTTGTTTAACCTTGTGGTCCCACCAGCTCCTTTGCTCGTCAGTGAGGGCAGTGACATCATCCTGCCCTGTCAGCTCTCATCTAAAGTCAGCGCTGCAGCCATGGAGGTGCAGTGGTTCAGAGAGATGCTCACTGACCCTGTCTATCAGTACAAAGATGGGATGGAGACAGAAGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU168042 lncRNA upstream 241434 8276375 ~ 8276580 (+) True G133947
TU168009 lncRNA upstream 320985 8196819 ~ 8197029 (+) True G133921
TU167885 lncRNA upstream 393315 8120899 ~ 8124699 (+) True G133833
TU167877 lncRNA upstream 400765 8062593 ~ 8117249 (+) True G133825
TU168143 lncRNA downstream 100481 8619507 ~ 8623220 (+) True G134018
TU168146 lncRNA downstream 105192 8624218 ~ 8627183 (+) True G134019
TU168166 lncRNA downstream 180385 8699411 ~ 8700618 (+) True G134033
TU168167 lncRNA downstream 183323 8702349 ~ 8702598 (+) True G134034
TU168168 lncRNA downstream 184723 8703749 ~ 8703968 (+) True G134035
AMCG00012007 mRNA upstream 49186 8464205 ~ 8468828 (+) True AMCG00012007
AMCG00012004 mRNA upstream 89334 8426020 ~ 8428680 (+) True AMCG00012004
AMCG00012005 mRNA upstream 116811 8398026 ~ 8401203 (+) True AMCG00012005
AMCG00012006 mRNA upstream 120973 8378333 ~ 8397041 (+) True AMCG00012006
AMCG00011993 mRNA upstream 480333 8029486 ~ 8037681 (+) True AMCG00011993
AMCG00012010 mRNA downstream 68104 8587130 ~ 8587981 (+) True AMCG00012010
AMCG00012011 mRNA downstream 75990 8595016 ~ 8601876 (+) True AMCG00012011
AMCG00012016 mRNA downstream 151463 8670489 ~ 8670824 (+) True AMCG00012016
AMCG00012015 mRNA downstream 159878 8678904 ~ 8698447 (+) True AMCG00012015
AMCG00012014 mRNA downstream 207797 8726823 ~ 8730941 (+) True AMCG00012014
TU168052 other upstream 130917 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 462993 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 485405 8028063 ~ 8032609 (+) False AMCG00011993
TU167842 other upstream 547096 7960698 ~ 7970918 (+) False AMCG00011986
TU167660 other upstream 951668 7565387 ~ 7566346 (+) False AMCG00011971
TU168082 other downstream 42016 8561042 ~ 8563214 (+) True G133974
TU168537 other downstream 1132323 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 1137331 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 1333864 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 1416900 9935926 ~ 9936411 (+) True G134340

Expression Profile