RNA id: TU167653


Basic Information

Item Value
RNA id TU167653
length 417
lncRNA type inter_gene
GC content 0.59
exon number 3
gene id G133667
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7505082 ~ 7508751 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTTCCCCTCAGCTACCCTTCCCAGTGGGGCGGCGTCATCGACGGGAAACCTTGCACCTCAGGTCTAGAGGTGTTCAGGAAAGCCGTCCTGGATGACCTCTGGGAGGCGCTGTTGGAGCAGTTTGTGCAGGAAGACGAGGGCTCAGAGGCGGGCTCAGAGGTCACCGAGCAGGAAGTATACCAGGAAGCCCAGCAGCGGAAGTGTCAGGGGCTGAGGAAGCTGGTCGCCACTGCTGCCGGCAAAATCCGAGAGTCTGGGAAGGGAGGGCCGGTGCTTGTCCATGGCGGTCCCGGGGAGGGGAAGACAGTTTTTATGGCCGCGCTGGCTAATGAGCTCAAGTGCCCGTCAGGCAAGACCCCCTCCTACgatgtcattttcttttttttgcggTTCCAGGGAAAAGATCATTGATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167622 lncRNA upstream 150117 7354370 ~ 7354965 (+) True G133642
TU167594 lncRNA upstream 290620 7214235 ~ 7214462 (+) True G133617
TU167581 lncRNA upstream 367517 7135868 ~ 7137565 (+) False AMCG00011948
TU167582 lncRNA upstream 367517 7135868 ~ 7137565 (+) True AMCG00011948
TU167555 lncRNA upstream 386232 7118297 ~ 7118850 (+) True G133583
TU167661 lncRNA downstream 3630 7509749 ~ 7519294 (+) True G133669
TU167674 lncRNA downstream 39164 7545283 ~ 7556712 (+) True G133681
TU167675 lncRNA downstream 40525 7546644 ~ 7547755 (+) True G133682
TU167649 lncRNA downstream 45176 7551295 ~ 7575165 (+) True G133665
TU167816 lncRNA downstream 324445 7830564 ~ 7843471 (+) True G133783
AMCG00011960 mRNA upstream 23452 7471715 ~ 7481630 (+) True AMCG00011960
AMCG00011961 mRNA upstream 53411 7441388 ~ 7451671 (+) True AMCG00011961
AMCG00011962 mRNA upstream 121112 7382975 ~ 7383970 (+) True AMCG00011962
AMCG00011963 mRNA upstream 131547 7371184 ~ 7373535 (+) True AMCG00011963
AMCG00011958 mRNA upstream 144018 7346950 ~ 7361064 (+) True AMCG00011958
AMCG00011971 mRNA downstream 53544 7559663 ~ 7575192 (+) True AMCG00011971
AMCG00011968 mRNA downstream 71237 7577356 ~ 7578348 (+) True AMCG00011968
AMCG00011972 mRNA downstream 93389 7599508 ~ 7683253 (+) True AMCG00011972
AMCG00011977 mRNA downstream 188894 7695013 ~ 7754715 (+) True AMCG00011977
AMCG00011976 mRNA downstream 273107 7779226 ~ 7782991 (+) True AMCG00011976
TU167596 other upstream 262782 7236941 ~ 7242300 (+) True G133619
TU167225 other upstream 946597 6545388 ~ 6558485 (+) False AMCG00011909
TU167207 other upstream 1015874 6483947 ~ 6489208 (+) True G133327
TU167105 other upstream 1248400 6255950 ~ 6256682 (+) False AMCG00011876
TU166897 other upstream 1617190 5887005 ~ 5887892 (+) False AMCG00011837
TU167659 other downstream 58689 7564808 ~ 7566028 (+) False AMCG00011971
TU167660 other downstream 59268 7565387 ~ 7566346 (+) False AMCG00011971
TU167842 other downstream 454579 7960698 ~ 7970918 (+) False AMCG00011986
TU167865 other downstream 521944 8028063 ~ 8032609 (+) False AMCG00011993
TU167873 other downstream 546005 8052124 ~ 8055021 (+) True G133822

Expression Profile