RNA id: TU168230



Basic Information


Item Value
RNA id TU168230
length 230
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G134084
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8888717 ~ 8888946 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTCTTTCCTTTTGATTAGTGAGCCTGCAATTGGATCCACCATCCTTGTCCCTGAGGTCATTACACCGGGGGGGTTTCTTCTATTAATGAACTGATGGCACTGTAGTAGTACTGAGTGTTTATACAGTTTACGATCTGCCGATAccaaaatattttcaagaaGTTATGTAATACTACTTTCAGTGTTTAGTGTTGATATTCAAAACTAcggtggctcgttgaggacatgG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU168209 lncRNA upstream 85839 8802523 ~ 8802878 (+) True G134068
TU168168 lncRNA upstream 184749 8703749 ~ 8703968 (+) True G134035
TU168167 lncRNA upstream 186119 8702349 ~ 8702598 (+) True G134034
TU168166 lncRNA upstream 188099 8699411 ~ 8700618 (+) True G134033
TU168146 lncRNA upstream 261534 8624218 ~ 8627183 (+) True G134019
TU168296 lncRNA downstream 305616 9194562 ~ 9195917 (+) True G134141
TU168335 lncRNA downstream 391939 9280885 ~ 9309931 (+) False AMCG00012043
TU168426 lncRNA downstream 512508 9401454 ~ 9414917 (+) True G134222
TU168454 lncRNA downstream 645368 9534314 ~ 9538974 (+) True G134236
TU168453 lncRNA downstream 645399 9534345 ~ 9538864 (+) False G134236
AMCG00012022 mRNA upstream 2820 8883629 ~ 8885897 (+) True AMCG00012022
AMCG00012023 mRNA upstream 21926 8848326 ~ 8866791 (+) True AMCG00012023
AMCG00012019 mRNA upstream 48966 8805101 ~ 8839751 (+) True AMCG00012019
AMCG00012014 mRNA upstream 157776 8726823 ~ 8730941 (+) True AMCG00012014
AMCG00012015 mRNA upstream 190270 8678904 ~ 8698447 (+) True AMCG00012015
AMCG00012024 mRNA downstream 13350 8902296 ~ 8910971 (+) True AMCG00012024
AMCG00012021 mRNA downstream 32962 8921908 ~ 8928713 (+) True AMCG00012021
AMCG00012025 mRNA downstream 50472 8939418 ~ 8951857 (+) True AMCG00012025
AMCG00012026 mRNA downstream 62918 8951864 ~ 8956717 (+) True AMCG00012026
AMCG00012030 mRNA downstream 81160 8970106 ~ 8990117 (+) True AMCG00012030
TU168082 other upstream 325503 8561042 ~ 8563214 (+) True G133974
TU168076 other upstream 369691 8518014 ~ 8519026 (+) False AMCG00012008
TU168052 other upstream 501620 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 833696 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 856108 8028063 ~ 8032609 (+) False AMCG00011993
TU168537 other downstream 762403 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 767411 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 963944 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 1046980 9935926 ~ 9936411 (+) True G134340
TU168629 other downstream 1145240 10034186 ~ 10034693 (+) True G134357

Expression Profile