RNA id: TU172672


Basic Information

Item Value
RNA id TU172672
length 222
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G137348
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20201551 ~ 20201804 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtcttgtagcccattccagccttgtgtaggtctacactcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcactccctttaagagagtgctcctaatctcagctcattacctgtataaaagacacctgggagccagaaaacttgctgattgataggggatcaa

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process

KEGG:

id description
ko00680 Methane metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172572 lncRNA upstream 305952 19891167 ~ 19895599 (+) True G137265
TU172544 lncRNA upstream 408019 19788987 ~ 19793532 (+) True G137242
TU172478 lncRNA upstream 511766 19659746 ~ 19689785 (+) True G137196
TU172454 lncRNA upstream 692353 19504883 ~ 19509198 (+) True G137177
TU172681 lncRNA downstream 44847 20246651 ~ 20254434 (+) False AMCG00012512
TU172701 lncRNA downstream 119802 20321606 ~ 20328824 (+) True G137364
TU172823 lncRNA downstream 218326 20420130 ~ 20422556 (+) False AMCG00012522
TU172869 lncRNA downstream 287960 20489764 ~ 20493787 (+) True AMCG00012523
TU172871 lncRNA downstream 331948 20533752 ~ 20533959 (+) True G137494
AMCG00012511 mRNA upstream 66898 20133322 ~ 20134653 (+) True AMCG00012511
AMCG00012496 mRNA upstream 344848 19852153 ~ 19856703 (+) True AMCG00012496
AMCG00012497 mRNA upstream 375288 19817519 ~ 19826263 (+) True AMCG00012497
AMCG00012495 mRNA upstream 413909 19763003 ~ 19787642 (+) True AMCG00012495
AMCG00012492 mRNA upstream 574182 19617738 ~ 19627369 (+) True AMCG00012492
AMCG00012513 mRNA downstream 24594 20226398 ~ 20234055 (+) True AMCG00012513
AMCG00012514 mRNA downstream 38030 20239834 ~ 20240031 (+) True AMCG00012514
AMCG00012512 mRNA downstream 52546 20254350 ~ 20270919 (+) True AMCG00012512
AMCG00012517 mRNA downstream 81445 20283249 ~ 20291367 (+) True AMCG00012517
AMCG00012518 mRNA downstream 99022 20300826 ~ 20327286 (+) True AMCG00012518
TU172571 other upstream 305952 19891167 ~ 19895599 (+) False G137265
TU172558 other upstream 385934 19814925 ~ 19815617 (+) True G137252
TU172360 other upstream 962593 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 1027130 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 1657061 18539545 ~ 18544490 (+) True AMCG00012460
TU172707 other downstream 129277 20331081 ~ 20341446 (+) True AMCG00012516
TU172848 other downstream 229121 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 229232 20431036 ~ 20440670 (+) False AMCG00012521
TU173010 other downstream 854891 21056695 ~ 21059263 (+) True G137583
TU173082 other downstream 1011793 21213597 ~ 21219163 (+) True G137633

Expression Profile