RNA id: TU172572


Basic Information

Item Value
RNA id TU172572
length 3671
lncRNA type inter_gene
GC content 0.50
exon number 4
gene id G137265
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19891167 ~ 19895599 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aacgaacccATAGGATtccatatacaaatacaaacaatactttttgcaattcgaagatataaaaaaaaatatatatgtacactttTACAAAAGTCAAACAATAGAACATTGTAGCTTGAAGAAATAGTAAATTGTTCTTGTTGAAGAACCCCACAAATGAAATGCTGTTCAGGAGTAGCCCTTGAAAGTTCtattaatcacaaaataaaaataaggtgCAATTCCTGATGTTAGAACCAATGTCAGGGGTTTGAGCCCAAGAACAGGGCTGCATTTGGCACTGGTAGTGTCAGAAAAGTTGACGTGACTAAACTCACGATCCAAAAGTcgagcagatttaaaaaaataattcgGTAGCAATTAACTAGGTTTGATCTGAATGCAGTTGGAGTTCTTGTGCTCAAAATCGGGGACAACCTCTAACAAGCGGAAAGACTCAACCCATGGTTGTATGAAGATCACAGGTAATCCGgaagacaatttaaaaaaaactttcctgTAGGCAGTTATAGAGCAAGTTTGCATCCATAGAAAGTGCAATATCACAGTTGAAAAACACTGATGTACAGCAAGTTTCAATACAATCAAGTCTGCATGTTACAATCCTCAGAAGAAATGCATAGCAAAGACCAGACAGACATGCAGAAGATCTCAAATACAAATCACGGATAATAGTAGTCATTTTTCTTTACTCTTCTGCAAGAACAGGGTGTTGCACACTCCTTCTTTGAGGAGAGAAATATAAAAGTGGTTCCTTTACTGAAAGTCCCACCCCACTGACATCAGGTATTTGGGAATGACTAAGACTGCAAACCGGACGGATCCAGAAAGTAGTGTGTGTGGGGTTTCAGGGTGACCCAAATTAAGCCGAAAGCTTTTGGGGGCTTGCAAAGGCCGCAAGCCTGTAGGAGTGTTCTAGTCAACTGCCCCTATTAAGATGGCTATGTTGCGAGTTATCCAACTTACAAAGTCTTTAAAACACAAGGTCGGACAGAACAGGCCGACACCAGGACAGTACCCCAGTGGGTGTGGTGCGCGACGACTCTTTGGAGGGCTGGAACTTTGAAGAGCACCAAGAAAAAACGCATAGGCCTATATAAATCTATAGGACGTTCAGCTCAAGTCTGCATGGAGAGACAAAGACTGACAAGTGTAGGCACTAAGCTTGCAGGGGCTGGTTTTCACCCTCTTTCCCGGCCTGGAACGCCACCTTTCTCATCTGATCCATCGATCCAGGCCGGCCTCGCAGAGAAGCCCTCGTCCTCAGTCGAGATTTCCAAACCATCTCTTCCTCCTCGTTGGCGGTCCCCCTTTTTTTACCATTCAAATgcggaagaaaaataaaacgctAGGCGAGAGTCACTGAGGAATCTGCGGCATGTCTCTCTAGCACGGGGGGCTGACGGCCATCATGTTGCCGTTAAACTGCTGGTTCAcctgagaggaagaggagagaggggtgggggttagTTTAAAGACCAAGCAGACAGCTTTCCAAAGAACAAGTGTTGAAGATATaattttatgcttttaaaagagCCTGGGAACAGGCCCTTACCTCGGAGTACGCAGGAGGAGGCGGGAACTCGAACTGGGGGACGTTCATGAAGAGGGGGCTGTCGCCGCCGTCATAGTCGTCCAGCAGCGGGGTGAGGGGTGTGTCCAGGCGGCAGTCACGGGCGATGTCGCAGTAGCTGGGGGGCGCTGAGGGCATGCGCAGGGACACCCAGCTGTTGGAGCTCGTGCTGCCGTCCTGGCTGGTCATGCTGTTGGTGCGGCTGCTAAGGCCATTGTAGGGGACAGTGCCGATCACGAGGGGCAGCTCCATCACCAGTTTGTCGCTGCCGGGGATGTGGACGTAGATCTGcgggagagaggaggagcaggagattAGAAAACGCTCTTCACGACCGAAGCAGGAACGGTTCTCGGGCTGCGGGCATCCAGGACACGAAGCGGAGGCGGGGACTCACCATGAGGGCGTACTCCACACGGATGATGTTGCAGCCCAGGATGGAGGGCTTGATCTTGGGCACCCGGATGCTCTTGCCCTGCCAGGCGTCGCACATGCCCGAGATGATGTGGTTGCCACGGACGGACGACAGCTTCTGCTGGAAGACTTTGGTGCGCCCGTTGGCCTGGTAGGTGTGCTTGGCCACGATGGCTGCCTTGGGTACCACGATGCGGGAACAGGTGTTCTCGAACTTGGCGTCGATGCAGATATCCTCGCcttCAGAAGCCCTTGCGGTCAATCTTGGCGTTCAGGGACACTTGCCCGTCAGGAATGAACATGCAGGTCACTTTCTTCTCTTTGGTCCCAGCAGCTGGAGACCATGAGGTCAGGGGTGTTGACATCCAAGGGCTCAACCACATCGAAGTTCTTCTTCACTTCCAGGGCCGGCTGGGAGGGTCTCTCCAGCAGGGCCTTAACGTAGTACTCCACGCTGCCAAACTTGCCCTTGTAGGACGAAAGAGAAGGTAGATGTTGAACTATTGTGTAGTttgcttaaaaacatttaaaacccttattaatgcacacacactaataaTTTGGCCTATAATAATCTGTCTCACTGAAGACCTCCTGCATGCGTCTCCCAACTAGGCCAGAGGCTGAATGTCCGCCTGCCAAGTACAGTAACCCCGCTCCATTTGTCTCCGTGCCATCACCCCTGGCATCCGTGCCCAGGGAATCCCCTGCTAGCACACCCTGACCTGGCACAGCAGGCTGTAATTCACCCCTGCGCTGCTGCTCCACAGCGCCCCCTCCGGCGCCCAGGCCTCGGCCGCTGCCACTGCGCTTCAGTGAAATAAGGGCTGCCCTGGACCCAGTGACAGGGGGCTCGCTGAAACAACCGACATCCACTAATCGGAGTTTCTATCACTttcgcatatatatatatatatatatatatacacattttttgcaTTACAATAACCTCGTTTCAATACAGAACAAACTTCCCAGAACTCAAAACGTACTTTACTTTGGAGGCCAGCGCTTGTGCCAGTCTACGCATCAGCTGCTCGAAACCTAAAAATCAATTAACCACTTAACACTCTCCTATCCCAATTAGCATGGGCTTCATCCACAAAGACAGCAGCAACAATTAAAACCTCAATAATGAGCAATTAGAGCAATGACGGGACCCCTGCTCTTACCGGTGGGCTGCTCGTCCAGCCGCAGCGTGTCCTCGTAGCGCAGGTAGTCCATCTCCTCATGGCAGCGCTGCTTGCCCTTCGGGTACTCCACCCGGGCGCAGCCGATGCCCAGGAAGCGCAGTGCGGACACCCGGGTCACTTCGgccacctccaccaccaccctGCCGGCCACTTTGTCTCCGCTGGAGTAGTACGCCTTGCTAGGGTCGCTGAAGACCACCTCGAAGGTCTTCAGTTTCTTGGTCATCACCACCATGACTGCAGGCTTTGTTGGAGTGTAAATCCGGATTCAGTGGAAACTAATTCAAAGCGGTGTGTGCGAGTTTGAACGGGGatggctttctttttttgcagTTGTGATCTAAAAACCCTACGATCTCTATCGCACTGGTTTGTGAAGTCTGCTGTAGTCTGTGCCTCCGTGCTCCACCATCTGCCTGTAACTCTAGAGGGTGTAAACAGGAAGGCTGGCTTTTATACCCCGGGCGCTAGCTAGTGAATCAGCGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172544 lncRNA upstream 97635 19788987 ~ 19793532 (+) True G137242
TU172478 lncRNA upstream 201382 19659746 ~ 19689785 (+) True G137196
TU172454 lncRNA upstream 381969 19504883 ~ 19509198 (+) True G137177
TU172456 lncRNA upstream 382308 19504883 ~ 19508859 (+) False G137177
TU172428 lncRNA upstream 465629 19423553 ~ 19425538 (+) True G137155
TU172654 lncRNA downstream 269684 20165283 ~ 20228036 (+) True G137332
TU172659 lncRNA downstream 274827 20170426 ~ 20237873 (+) True G137337
TU172660 lncRNA downstream 281482 20177081 ~ 20237873 (+) False G137337
TU172672 lncRNA downstream 305952 20201551 ~ 20201804 (+) True G137348
TU172681 lncRNA downstream 351052 20246651 ~ 20254434 (+) False AMCG00012512
AMCG00012496 mRNA upstream 34464 19852153 ~ 19856703 (+) True AMCG00012496
AMCG00012497 mRNA upstream 64904 19817519 ~ 19826263 (+) True AMCG00012497
AMCG00012495 mRNA upstream 103525 19763003 ~ 19787642 (+) True AMCG00012495
AMCG00012492 mRNA upstream 263798 19617738 ~ 19627369 (+) True AMCG00012492
AMCG00012493 mRNA upstream 309728 19558654 ~ 19581439 (+) True AMCG00012493
AMCG00012511 mRNA downstream 237723 20133322 ~ 20134653 (+) True AMCG00012511
AMCG00012513 mRNA downstream 330799 20226398 ~ 20234055 (+) True AMCG00012513
AMCG00012514 mRNA downstream 344235 20239834 ~ 20240031 (+) True AMCG00012514
AMCG00012512 mRNA downstream 358751 20254350 ~ 20270919 (+) True AMCG00012512
AMCG00012517 mRNA downstream 387650 20283249 ~ 20291367 (+) True AMCG00012517
TU172558 other upstream 75550 19814925 ~ 19815617 (+) True G137252
TU172360 other upstream 652209 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 716746 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 1346677 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 1502861 18385289 ~ 18388306 (+) True G136864
TU172707 other downstream 435482 20331081 ~ 20341446 (+) True AMCG00012516
TU172848 other downstream 535326 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 535437 20431036 ~ 20440670 (+) False AMCG00012521
TU173010 other downstream 1161096 21056695 ~ 21059263 (+) True G137583
TU173082 other downstream 1317998 21213597 ~ 21219163 (+) True G137633

Expression Profile