RNA id: TU58721


Basic Information

Item Value
RNA id TU58721
length 999
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G47096
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 44222386 ~ 44223384 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttgAGCTGCCCGGAAAACCAGGCCTTTCAGTTTTCCAATGGACATTACATCTGGCTTCGTCAAGTTTTGTAGATGAAGAACTGGGGTCTCTGTTATATCCAGCTAGTTTTCCAGGGTTATCTTGTAAGTTACACAAAAAGAAACGTGTTGGGTGACACACATTCCAGCTCTTGTCTTCAGGAGTATATATTCTCTTGGGACTTTTTGCATTCATACATTTCACCTTAATCACATACCATTTTGCCTCAGCAGGTAGACCGAGCACAACCATTTACAGCCAGATCCTGTGGCGTTAATCCTTCTCGAGAACACCTTTCCATTCTATAGGTGTGATGATCCCCCCCGTCCTAACCACAGTGTCACACGCAGACCAAAGTGCAAACGGACAATTtatcgtattgtttatttgatgcTTATTGGACTTGTTTGAGTGACGGGGTCTGCTGTGGCGATGCACACTGAACGTgccactgtacacacacagtccagtcaTAAATCGAACCCCTCCACACTCGGGCCAGTGTGAGCCTGGCGGGTTTTATACTGTTTATGTTtcagacaacacacacatccTCCAAAAAGTGCACTGTAACACCCTCCCTGCGGCGTCTGTGTATATGACTTTCTCAAACAGTACAGACCAGGATGCAGAAATCGCTGTGAGTGCTGTACTGTCTCACACGGGTGATATTACACGACTGGAGTTTCATGAACCATCCAAAACTGCTTCCCCAAACACTGGTGgcataagaaaaaaatgcagtgaaaagcAATAAGACGTAATTACATTTACCGACTCGGGAAGAGCAAAGCTGGGCAAGTCCTTCCACTGACTAGACCACCTCTCTCTGGCCTCATCAAAGCCAGGGTGACGGACAGCGGCTATATTATGACATCACAGCCGAATCTCAGACGGGAATATCAGTCAAGCTGGCAGCACGGTGCACGATCCGCAGTGCTCTTGGGGGGATTACTCTTAATTCTCCCACACTGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58707 lncRNA downstream 73455 44125766 ~ 44148931 (-) True G47082
TU58676 lncRNA downstream 99180 44116240 ~ 44123206 (-) True G47055
TU58656 lncRNA downstream 302424 43919661 ~ 43919962 (-) True G47041
TU58613 lncRNA downstream 609135 43609361 ~ 43613251 (-) False AMCG00013820
TU58590 lncRNA downstream 655391 43566795 ~ 43566995 (-) True G46990
TU58735 lncRNA upstream 65671 44289055 ~ 44291787 (-) True G47109
TU58743 lncRNA upstream 273602 44496986 ~ 44497305 (-) True G47117
TU58766 lncRNA upstream 474843 44698227 ~ 44699767 (-) True G47139
TU58794 lncRNA upstream 586261 44809645 ~ 44809876 (-) True G47153
TU58806 lncRNA upstream 738465 44961849 ~ 44963480 (-) True G47162
AMCG00013831 mRNA downstream 19939 44186012 ~ 44202447 (-) True AMCG00013831
AMCG00013828 mRNA downstream 44760 44160652 ~ 44177626 (-) True AMCG00013828
AMCG00013825 mRNA downstream 215753 44004877 ~ 44006633 (-) True AMCG00013825
AMCG00013822 mRNA downstream 511391 43703998 ~ 43710995 (-) True AMCG00013822
AMCG00013823 mRNA downstream 522245 43694907 ~ 43700141 (-) True AMCG00013823
AMCG00013830 mRNA upstream 19131 44242515 ~ 44256042 (-) True AMCG00013830
AMCG00013832 mRNA upstream 68464 44291848 ~ 44316684 (-) True AMCG00013832
AMCG00013835 mRNA upstream 447704 44671088 ~ 44677499 (-) True AMCG00013835
AMCG00013836 mRNA upstream 507473 44730857 ~ 44733745 (-) True AMCG00013836
AMCG00013842 mRNA upstream 1056392 45279776 ~ 45288602 (-) True AMCG00013842
TU58280 other downstream 1521318 42699506 ~ 42701068 (-) True G46742
TU57875 other downstream 3613858 40603601 ~ 40608528 (-) True G46423
TU57869 other downstream 3634994 40586816 ~ 40587392 (-) True G46418
TU57809 other downstream 3793761 40386061 ~ 40428625 (-) True AMCG00013730
TU57766 other downstream 3947288 40273391 ~ 40275098 (-) True G46333
TU58927 other upstream 1399854 45623238 ~ 45623895 (-) True G47261
TU59115 other upstream 1700538 45923922 ~ 45924348 (-) False AMCG00013882
TU59142 other upstream 1740507 45963891 ~ 45974311 (-) True AMCG00013883
TU59204 other upstream 1852045 46075429 ~ 46083542 (-) True AMCG00013890
TU59251 other upstream 1937155 46160539 ~ 46163487 (-) True G47501

Expression Profile