RNA id: TCONS_00009320


Basic Information

Item Value
RNA id TCONS_00009320
length 3234
RNA type mRNA
GC content 0.48
exon number 22
gene id XLOC_004704
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 22672323 ~ 22815847 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTCGTGCAGGGATGATGGTGCTGAGGCAAATACGCACGAGCGCATCACAGCCATACGCCAACACCCAGTTCGTGCATGCGCCCGCAACACTGCGCACTACGTTTATTACCGATCCTATAGCACACATAACTACTTTTCTAAAATCGGAGGTGCGAGGCGCttagtattcattttttttaaacacccatTGTGTCGGCTTTAGCGCTCGTGCACCGGGCGGCTGATGAAAGATGTGCAGCGCGCGCTGAAAGCTGAAGAAGATCTGTAGATACGCATGACATTGGGCTCTGGAAAGGTCTGCAGAGAACAATGAGCACCGCGTTTCACCAGCAGGCTGTCCACAGTCCCCTGGAGCAGCAGAAGGGCCAGCGGCAGAGTGGCCCGGTCCCCTGTCAAAACTGTGGCAAACCCTGCAAAGGAGAGGTGCTCCGGGTGCAGAACAAACACTTCCACATCAAGTGCTTTGTTTGCAAAGTTTGTGGATGTGACTTGGCTCAAGGAGGGTTTTTTGTGCGTCAAGGCGAGTATATCTGCACTGTGGATTACCAGCGACTCTATGGCACCCGCTGCTTCAGCTGTGAGGAGTTCATTGAAGGAGAGGTTGTGTCTGCCCTGGGCAAGACTTACCATCCACGCTGCTTTGTTTGTGCCACCTGCAAGCAGCCGTTTCCAGCTGGCGACCGCGTGACGTTTAATGGGAAggagtgcatttgtgagaaatgTACTCAGCCTGTGCCAGTCAACAGCACGGCTCCCCCACAGGCTGTGCACAATTGCTGTGGATGTGGAAAGGAGTTTAAAAATGAGCAGTCTCTGGTGGCGCTGGACAAGCACTGGCACCTTGGCTGCTTCAAGTGCAAAGTGTGCAATAAAGTGCTTAATGCCGAATATATCAGCAAGGATGGGATCCCCTACTGTGAGGCAGATTACCACGCCATGTTCGGCATCCAGTGTGAAACCTGCAAGAAATACATCACCGGAAAAGTACTTGAGGCTGGAGAAAAACACTACCATCCCACATGTGCCAGATGTGCTCGCTGTGACCAGATGTTTGGGGAAGGGGAGGAGATGTACCTGCAAGGTTCTACCATCTGGCATCCTCCTTGCAGACAGGCAGCGCGTATGGAGGAGAAGAGCAAGGTGACGCGAACCTCCTCTGAGAGCATCACTTCTgctccagcctccagcgcctcAGGCTCCCCTAGCAGAGTTATCTATGCAAAACTGGGTGATGAACTTCTGGATTATAAGGATCTGGCTGCTCTTCCTAAAATCAAAGCCATCTACAACATTGACAGGCCTGACATGCTTTCATACTCGCCCTATGTGAGCTATCCTGTGGAGGACAGGACTTTTGGAGAGTCACCCCAGCAACTAACGCCTACTCCAACTGAGGGAGATGGGGAAAAGTCTCCCCGTCAGAGGAGGCCCTCGAGCCCCAGCTCCAACAGCTCTTTAGGAGGCTATGGTCGCTATACGCCTTCCCGCTCACCACAGACCTACAGCAGACCAGACCAGTATCTGAGCATCAAATACACCACCCAGCCAGAAAATTCCCACTTGCTCTCTGTACCAACCTCGGGGAGGAGTAGTGCCCATGGTAGTGCCAGAGGCTCCTCCCCGCTGCCTCTGTACAACAGCAGTGGTAGAAACACACCCCAGGCAGCCCTGCTTCTCAACCCCACTACTCTGGCTTTACTCCAGCAGCACAACTACATCCCTTACTTCAGAGGTAGTGAAAGTGGGCGCAGTACCCCCAGTCTCTCCACCTACTCTGATGGCAAATCTCCATCGTCTACATATGTGGCAGCCCCACGGCATTTCCATATCCCAGAGACTAAAGTCAAAGATAATATCTATAGAAAGCCCCCTATCTACAAACAGCATGCTTCCAGAACCTCCTGGCAAGATGGTGATGATGTAGACAGAAAGACCAGGACCAGTTGGATGAACCTGAAGACTGAGATTGATGGACAGTCTCCAGAGCTAGACCCCAGGACCTCCACACACAGCCTGCCCACTGATATGTCTCAACCCAACTTTCCATATAACAAGTCTGCTTCCCTGCCAGGATATGGGCGGAACGGCATATACAAGGCAGCTGATCTTGGTGAGGATGAGGCAGACCATGATTCATCCTGGAGTGGAATGAGAGAGTACAAGGTGTACCCATATGACATGCTAGCTGTGTCCCACAGAGTCCGAGTAAAACTACCACGTGATGTGGACCGCACCAGACTGGAGAGGCACCTGTCACCAGAGGACTTCTACAATGTGTTTAGGATGACCATTGAACAGTTTGACCGTTTGGCcttgtggaaaaaaaatgaacTGAAGAAGAAAGCCCGCCTGTTTTAAACCACGCTGAATCGCTTGAAAGAAAGCAAAGATAAAGAGAAAACCTCTTCTCATCCGTCCTGTGCGCACTGAGGGATGAGTGTGAGAGAAATATATATGCACCTCCGTTCTGCTGCATAGCTATTGCCATCCCATCTCACGCTGAGGAAGAGGAAGTGCTTTCACAACGCTGTTCGCCACCAAGCTTCATGTGTGAACGCCACATCACATGGTCTGAATGTTAATCCGAGACTGGAGTCGGAACTCAATTCTCCACGACTCTCTTTGATTGTGTTCGATTTCGCTCCCTCGGCTGTCTTTGTGATTACTGCGTTGTATTCTCTCTTTGTGGAAAAAGCACTCAATATTGATATAAGCctctttctttacattttatacaGTTGATAAAACACGGCCAAGCAGCTCTACTTGTAAATCTTTATGCTGTGTAATAACATCCAATGTTCCCACTCCCCTTGTCTTTTGCTATGATTGTCGTCCAATGTCCTTGTCTACTCATATAGAGTGCATTATTCTGCCTCCCTACCACATCAGCAGATCTGGTTCCAGAAGTATTTTTACCATTCAATTTTCCGATAGggattaaaaaaatgtcattatcaaTAATTAAATGCTATGTGAAAAATCAAAAGTTTGATTTGAAACATAAGAGAAAAAATCCATCAAAAGAAAAGGTTTACAAAGAACTACAATCTCATGAAGCATTGCAGATGACACAGTTGAAATCAGTGGAAATATAAAACTCTTCATGTAAAGTTGTTGGTTGTATATTTATACCCCAACGTCAAGTTAAATACTGGTATGCAAAATTTTCAGGTATTTTGATTgttcacagctggtcctgcatcagTTCACGATTGATTTACCAATCaaa

Function

GO:

id name namespace
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0032133 chromosome passenger complex cellular_component
GO:0051233 spindle midzone cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100316-5 Predicted to enable actin filament binding activity. Predicted to be involved in lamellipodium assembly. Predicted to act upstream of or within actin cytoskeleton organization and transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be active in actin cytoskeleton. Orthologous to human ABLIM2 (actin binding LIM protein family member 2).

Ensembl:

ensembl_id ENSDART00000152879

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010735 lncRNA upstream 60993 22618388 ~ 22619122 (+) True XLOC_004701
TCONS_00009303 lncRNA upstream 253060 22423953 ~ 22427055 (+) False XLOC_004697
TCONS_00010927 lncRNA upstream 375274 22289980 ~ 22304841 (+) True XLOC_004696
TCONS_00010734 lncRNA upstream 420717 22258962 ~ 22259398 (+) False XLOC_004696
TCONS_00010926 lncRNA upstream 660345 22017946 ~ 22019770 (+) True XLOC_004695
TCONS_00010928 lncRNA downstream 221600 23037447 ~ 23040091 (+) True XLOC_004707
TCONS_00010929 lncRNA downstream 638582 23454429 ~ 23605722 (+) False XLOC_004711
TCONS_00010930 lncRNA downstream 638611 23454458 ~ 23605722 (+) False XLOC_004711
TCONS_00010931 lncRNA downstream 638681 23454528 ~ 23469341 (+) False XLOC_004711
TCONS_00010932 lncRNA downstream 638681 23454528 ~ 23491893 (+) False XLOC_004711
TCONS_00009317 mRNA upstream 1564 22674030 ~ 22678551 (+) False XLOC_004704
TCONS_00009315 mRNA upstream 1566 22672323 ~ 22678549 (+) False XLOC_004704
TCONS_00009316 mRNA upstream 1566 22672325 ~ 22678549 (+) False XLOC_004704
TCONS_00009318 mRNA upstream 1567 22674086 ~ 22678548 (+) False XLOC_004704
TCONS_00009314 mRNA upstream 15552 22657925 ~ 22664563 (+) True XLOC_004703
TCONS_00009324 mRNA downstream 7372 22823219 ~ 22916314 (+) False XLOC_004705
TCONS_00009325 mRNA downstream 7465 22823312 ~ 22884800 (+) False XLOC_004705
TCONS_00009326 mRNA downstream 54525 22870372 ~ 22888799 (+) False XLOC_004705
TCONS_00009327 mRNA downstream 54525 22870372 ~ 22915604 (+) False XLOC_004705
TCONS_00009329 mRNA downstream 54525 22870372 ~ 22915700 (+) False XLOC_004705
TCONS_00009313 other upstream 18735 22657923 ~ 22661380 (+) False XLOC_004703
TCONS_00009307 other upstream 101585 22578404 ~ 22578530 (+) True XLOC_004700
TCONS_00009304 other upstream 235343 22443629 ~ 22444772 (+) True XLOC_004697
TCONS_00009299 other upstream 885999 21794002 ~ 21794116 (+) True XLOC_004694
TCONS_00009295 other upstream 1242657 21437346 ~ 21437458 (+) True XLOC_004691
TCONS_00009330 other downstream 105630 22921477 ~ 22932021 (+) False XLOC_004706
TCONS_00009332 other downstream 294316 23110163 ~ 23110277 (+) True XLOC_004708
TCONS_00009336 other downstream 761419 23577266 ~ 23577391 (+) True XLOC_004712
TCONS_00009341 other downstream 1022952 23838799 ~ 23866353 (+) False XLOC_004717
TCONS_00009347 other downstream 1094985 23910832 ~ 23910949 (+) True XLOC_004718

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000063_03920353_03956590.mRNA True 1800 mRNA 0.52 17 CI01000063 3920353 ~ 3956590 (+)
bowfin (Amia calva) AMCG00017624 True 3920 mRNA 0.42 21 CM030131.1 13911085 ~ 13970970 (-)