Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00009325 |
| length | 642 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 5 |
| gene id | XLOC_004705 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 22823219 ~ 22916314 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051493 | regulation of cytoskeleton organization | biological_process |
| GO:0009966 | regulation of signal transduction | biological_process |
| id | description |
|---|---|
| ko04812 | Cytoskeleton proteins |
| id | description |
|---|---|
| ZDB-GENE-100316-6 | Predicted to act upstream of or within regulation of cytoskeleton organization and regulation of signal transduction. Is expressed in brain. Human ortholog(s) of this gene implicated in open-angle glaucoma. Orthologous to human AFAP1 (actin filament associated protein 1). |
| ensembl_id | ENSDART00000192571 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00010735 | lncRNA | upstream | 204190 | 22618388 ~ 22619122 (+) | True | XLOC_004701 |
| TCONS_00009303 | lncRNA | upstream | 396257 | 22423953 ~ 22427055 (+) | False | XLOC_004697 |
| TCONS_00010927 | lncRNA | upstream | 518471 | 22289980 ~ 22304841 (+) | True | XLOC_004696 |
| TCONS_00010734 | lncRNA | upstream | 563914 | 22258962 ~ 22259398 (+) | False | XLOC_004696 |
| TCONS_00010926 | lncRNA | upstream | 803542 | 22017946 ~ 22019770 (+) | True | XLOC_004695 |
| TCONS_00010928 | lncRNA | downstream | 152647 | 23037447 ~ 23040091 (+) | True | XLOC_004707 |
| TCONS_00010929 | lncRNA | downstream | 569629 | 23454429 ~ 23605722 (+) | False | XLOC_004711 |
| TCONS_00010930 | lncRNA | downstream | 569658 | 23454458 ~ 23605722 (+) | False | XLOC_004711 |
| TCONS_00010931 | lncRNA | downstream | 569728 | 23454528 ~ 23469341 (+) | False | XLOC_004711 |
| TCONS_00010932 | lncRNA | downstream | 569728 | 23454528 ~ 23491893 (+) | False | XLOC_004711 |
| TCONS_00009320 | mRNA | upstream | 7465 | 22680115 ~ 22815847 (+) | False | XLOC_004704 |
| TCONS_00009323 | mRNA | upstream | 8339 | 22745618 ~ 22814973 (+) | False | XLOC_004704 |
| TCONS_00009322 | mRNA | upstream | 8339 | 22745618 ~ 22814973 (+) | False | XLOC_004704 |
| TCONS_00009321 | mRNA | upstream | 8339 | 22745618 ~ 22814973 (+) | True | XLOC_004704 |
| TCONS_00009317 | mRNA | upstream | 144761 | 22674030 ~ 22678551 (+) | False | XLOC_004704 |
| TCONS_00009331 | mRNA | downstream | 36692 | 22921492 ~ 22933524 (+) | True | XLOC_004706 |
| TCONS_00009333 | mRNA | downstream | 486742 | 23371542 ~ 23416061 (+) | True | XLOC_004709 |
| TCONS_00009334 | mRNA | downstream | 539308 | 23424108 ~ 23430356 (+) | True | XLOC_004710 |
| TCONS_00009337 | mRNA | downstream | 779535 | 23664335 ~ 23674621 (+) | True | XLOC_004714 |
| TCONS_00009338 | mRNA | downstream | 878166 | 23762966 ~ 23796566 (+) | False | XLOC_004715 |
| TCONS_00009319 | other | upstream | 77529 | 22677953 ~ 22745783 (+) | False | XLOC_004704 |
| TCONS_00009313 | other | upstream | 161932 | 22657923 ~ 22661380 (+) | False | XLOC_004703 |
| TCONS_00009307 | other | upstream | 244782 | 22578404 ~ 22578530 (+) | True | XLOC_004700 |
| TCONS_00009304 | other | upstream | 378540 | 22443629 ~ 22444772 (+) | True | XLOC_004697 |
| TCONS_00009299 | other | upstream | 1029196 | 21794002 ~ 21794116 (+) | True | XLOC_004694 |
| TCONS_00009330 | other | downstream | 36677 | 22921477 ~ 22932021 (+) | False | XLOC_004706 |
| TCONS_00009332 | other | downstream | 225363 | 23110163 ~ 23110277 (+) | True | XLOC_004708 |
| TCONS_00009336 | other | downstream | 692466 | 23577266 ~ 23577391 (+) | True | XLOC_004712 |
| TCONS_00009341 | other | downstream | 953999 | 23838799 ~ 23866353 (+) | False | XLOC_004717 |
| TCONS_00009347 | other | downstream | 1026032 | 23910832 ~ 23910949 (+) | True | XLOC_004718 |
