RNA id: TU60685


Basic Information

Item Value
RNA id TU60685
length 2217
RNA type TUCP
GC content 0.53
exon number 2
gene id G48570
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49870993 ~ 49918397 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACACAGACACACTCGCTTACACTCACCCAGACAGACActtgcttacacacacagacatacttACACACAGActcgctcacacacaaacacaaacacacaaaaagacacaCTTGACACACTCACtcgcttacacacacacacagacacacttacacacagacagacaaacaaacacacacgcacaaagacacacacattattattatcatgaacACTGGCGGGGGTGGGCAGTGGTGCAGGTGTTCTGACCAGGAgaaggtgctgtgtgtgtcgcTCACTGTGGAAGGATCCTGTCCTGGGCTCTGGGCCGGCGCACACAGGTCACACTCCCTGCACAGActttataacaataaataacaagtgCGAAAGAACAGTGACCATCCCCCCGCCCCGGCCCGCACACTCGCCgtacaatttaataaataatttaaaaaatgaaaacaatttaaaaacccCAGTAAGCATCTCCCTAGGCTCCCTGCAGCCCCAGCGCAGCCCTAGAGTCCAGAGAGACGGACCGAGGTAAAAGTCACTGTCCTCAGAGCGCAACACGGACACTCAGGGCCTCAGCAGCCGCCCCTGGTGACGTGCAGACTGACCAGAGAGAGTAGCGCCAGAGCGAGCGGagaggtaaataaataaacaaaccaatcaaacaatcaatcaatcaatcaataaataaatacatgtgaagATCTGACTCTCCGGGCAGGAAAAGAACGACGACAGCATCACAGACGGAGCTTCGtaaagaaatggaaataaaggcaaaaacaaacatacaaatccTTCTGTCTGCAGTAAGGAGCACGGAGCGGACAGCACAGAGCTGAGCGGCCTACGCGGCCCGGACACTGGATGCAGCTCACCAGGTCTCCGGACACTGACCCGGGGTGCGGGTCACCGCTAACACacctttagttttattttttttaatcttttgttttcttcttttatatataaaattcaAACGTCTGTGGAAACGCGGGGCAGTGCAGCAGCTCTGTCGCATACTCCTCGACAAAGTAACACAGCAGAACACAGCGGTCAAAACAAATCGCCAACTACAGTCACACCGTGACCCGTCAGGGAGAGTGGCAGGAGAGCGGGCAGCGCTGGTGCCGCCGCAGTGGCTCAGTCCAGTCAGCCGCTCCTGCCCCGGTCCGTCTCCCCGTCCACTGTCAGTCTGGCCACGACCCTGTTCCTCCCCTGGACACAAGTCTGTTCTCTTCCTGTTCCCTGCGGGCTGGACTCCACgctgacactctctctcacattctatcacactcactctctgtctctctctctttttcactctctcacactctatcacactcactctctctctctctctcttcctcccgtCTCCATCATTGCTGCGCCCTGCTGCCCCACTTCGCTCCCCTGTTCACGGCCATGAAACATCCAGCATCCCCTGCGTCCAGATAACAGCCAGTGCGGAGGGCAGCGGACAGTGTGGGGGTCCGCAGGGCTGTTCACAGAGCTGGGAGTCTGTGTAGCCTTGGGGGGCCGGGCCAACACCTGCCCCCCCACGCTGCCTCCAGGGGAActacacactttcacacacctttgaaaaataaataaataaaggaacaaaaccgagaacaaaaacatctgatggtggaaaaaatcaaaataaatcaaatgtttctATCGGTATAAACTGTCCCCTCTGGGATAGAAAAGAATgcagagtggaggagggggtggTGTCGCGATACGGtgtcatggaaaaaaacaccaataaatcaattaatcgaTCGGTCGCCCGCCGGCCCCAAGCCGATCAGCTGGGCAGCAGCCACAACTCCAGCAGGTCCCAGTGCTTCCACAGCGCGAACAGCAGCAGTGCCAGCAGCATGGTGGCGGCCACGCGCGCCCGCGTCTTCATCAGCGGCGTGATGAAGTTGGCCAGCGTGGACACGAACACCAGCAGCACTGCCATCAGTGCCAGGATCACGTTGATGAACTTGCCCAGCAGTGCCCGTGCATTGGCGTTCTCCACCCCCTCCAGCTGCAcaacctgctgctgctgctgctgcaactCCAGCTTCGTGATGCGCGTCAGGCAGGACTCCACCGCCTCCTGCAGGGAaacgcacacgcatgcacacatacacacacacacacagagacacacgcacgcacgcacacacacacacacagacagagacacacacacaaagacacagaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60616 lncRNA downstream 121711 49748589 ~ 49749282 (-) True G48517
TU60612 lncRNA downstream 123442 49744946 ~ 49747551 (-) False G48516
TU60607 lncRNA downstream 136821 49733909 ~ 49734172 (-) True G48512
TU60604 lncRNA downstream 143986 49726288 ~ 49727007 (-) True G48509
TU60603 lncRNA downstream 144744 49725735 ~ 49726249 (-) True G48508
AMCG00014043 mRNA downstream 5337 49864322 ~ 49865656 (-) True AMCG00014043
AMCG00014042 mRNA downstream 39622 49820480 ~ 49831371 (-) True AMCG00014042
AMCG00014045 mRNA downstream 52717 49814049 ~ 49818276 (-) True AMCG00014045
AMCG00014047 mRNA downstream 66392 49796846 ~ 49804601 (-) True AMCG00014047
AMCG00014048 mRNA downstream 76227 49791343 ~ 49794766 (-) True AMCG00014048
AMCG00014041 mRNA upstream 15911 49889286 ~ 49901963 (-) True AMCG00014041
AMCG00014044 mRNA upstream 57785 49931160 ~ 49934490 (-) True AMCG00014044
TU60614 other downstream 123442 49744946 ~ 49747551 (-) True G48516
TU60605 other downstream 141938 49728504 ~ 49729055 (-) True G48510
TU60601 other downstream 149467 49719765 ~ 49721526 (-) True G48506
TU60452 other downstream 372363 49494727 ~ 49498630 (-) True G48392
TU60423 other downstream 386226 49484500 ~ 49484767 (-) True G48373

Expression Profile