RNA id: TU86412


Basic Information

Item Value
RNA id TU86412
length 526
RNA type TUCP
GC content 0.61
exon number 3
gene id G69156
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8383285 ~ 8384224 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCATATTGGGATTGGCTGGTGACTTGGCCACCTGTCTGCCCGTCTGCAGGTGGCTGATATGCTGCTGGAGCTGTGCGTGACCGAGCTGGAGGACGTTGCCACAGACTCCCAGAGCGGCCGCCTGTCCTCCCAGCCCGTCGTGGTGGAGAGCAGCCACCCCTACACCGACGACACGTCCACCAGCGGCACTGTGAAGATACCAGGTGCCGAGGGGCTGAGAGTGGAGTTCGATCGGCAGTGCTCCACAGAGAGGCGCCACGATCCTCTCACCATCATGGACGGCGCCAACCGGATCGTGTCCGTCAGATCAGGGCGGGAGTGGTCCGATTGGTCGAGTGAGCTGCGCATCCCGGGAGACGAACTGAAGTGGAAGTTCACCAGCGACGGCTCGGTCAATGGCTGGGGCTGGCGCTTCACTGTCTACCCCATCATGCCAGCTGCAGGTACTGCCTCACTGCACCCTCTGGAAATGCAGCTGACCCGTAGAAACCACACGTTACATAcagcgatcagccataacattat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86331 lncRNA downstream 132724 8226494 ~ 8250561 (-) True G69086
TU86291 lncRNA downstream 247091 8134903 ~ 8136194 (-) True AMCG00014297
TU86202 lncRNA downstream 508927 7874153 ~ 7874358 (-) True G68981
TU86117 lncRNA downstream 756910 7625985 ~ 7626375 (-) True G68905
TU86087 lncRNA downstream 917623 7465409 ~ 7465662 (-) True G68875
TU86493 lncRNA upstream 506332 8890556 ~ 8890839 (-) True G69233
TU86513 lncRNA upstream 614202 8998426 ~ 8998626 (-) True G69250
TU86641 lncRNA upstream 965564 9349788 ~ 9355238 (-) True G69352
TU86667 lncRNA upstream 1205600 9589824 ~ 9590081 (-) True G69372
TU86668 lncRNA upstream 1206952 9591176 ~ 9591381 (-) True G69373
AMCG00014304 mRNA downstream 48833 8330056 ~ 8334452 (-) True AMCG00014304
AMCG00014305 mRNA downstream 56865 8322434 ~ 8326420 (-) True AMCG00014305
AMCG00014303 mRNA downstream 78104 8304531 ~ 8305181 (-) True AMCG00014303
AMCG00014302 mRNA downstream 122305 8259727 ~ 8260980 (-) True AMCG00014302
AMCG00014301 mRNA downstream 185660 8189023 ~ 8197625 (-) True AMCG00014301
AMCG00014312 mRNA upstream 152713 8536937 ~ 8539049 (-) True AMCG00014312
AMCG00014310 mRNA upstream 216938 8601162 ~ 8615001 (-) True AMCG00014310
AMCG00014311 mRNA upstream 347354 8731578 ~ 8758181 (-) True AMCG00014311
AMCG00014317 mRNA upstream 645881 9030105 ~ 9040045 (-) True AMCG00014317
AMCG00014319 mRNA upstream 663080 9047304 ~ 9050642 (-) True AMCG00014319
TU86302 other downstream 224695 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 244159 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 959994 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 1002505 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 5554141 2825562 ~ 2829144 (-) True G68088
TU86630 other upstream 926227 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 2412492 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 3275797 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 19945515 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 21005066 29389290 ~ 29398305 (-) True G72477

Expression Profile