RNA id: AMCG00015713


Basic Information

Item Value
RNA id AMCG00015713
length 702
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00015713
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 17523279 ~ 17547496 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGCTCAACAGAAGTATCGAATTGGAGCACTTCGAGGAGCGGGACAAAGCGCACCGCTCGTCCCGGGGGcccggctccggctccggctctCAGTCCGGGTCCAGGGGGAACGGTCTGATCCCCAGCCCGGCTCACAGCGCGCACTGCAGCTTCTATCGCACCCGCACTCTGCAGGCACTCAGCTCCGAGAAGAAAGCCAAGAAAGTCCGCTTTTACAGAAATGGAGACAAATATTTCAAGGGTTTGGTGTATGCGGTGTCCAGTGACCGGTTCAGGTCCTTCGATGCTCTCCTCATGGAGCTGACCAGGTCTCTTTCGGACAATGTGAACCTGCCTCAGGGAGTCAGGAGCATATACACTGTGGATGGGTCAAGAAAGCTAACAAGCATGGAGGAGTTGGTTGAAGGTGAAAGCTATGTGTGTGCCTCTAACGAACCCTTCCGCAAGGTTGACTACATGAAGAATGTGAACCCCAACTGGTCAGTGAACATCAAGGCAGGGGCAGCacgctccctctcctccctgaGCTCCCTGAAGAGTGAAATGAGGGAGAGTAAAGACTTCATCAAGCCGAAACTGGTGACTGTCATCCGCAGTGGGGTGAAGCCACGCAAAGCCGTGAGGATCCTTCTCAACAAGAAGACCGCCCACTCCTTTGATCAGGCAGCAAAGATCTTCACAGACAGGCCAAAGAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124745 lncRNA downstream 388096 17134927 ~ 17135183 (-) True G99860
TU124706 lncRNA downstream 518866 17001994 ~ 17004413 (-) True G99830
TU124692 lncRNA downstream 652160 16870642 ~ 16871119 (-) True G99816
TU124679 lncRNA downstream 808444 16714447 ~ 16714835 (-) True G99804
TU124648 lncRNA downstream 922901 16599093 ~ 16600378 (-) True G99777
TU124821 lncRNA upstream 100555 17648051 ~ 17704580 (-) True G99923
TU124834 lncRNA upstream 249813 17797309 ~ 17799497 (-) True G99936
TU124835 lncRNA upstream 254662 17802158 ~ 17803919 (-) True G99937
TU124839 lncRNA upstream 357541 17905037 ~ 17905456 (-) True G99941
TU124840 lncRNA upstream 385504 17933000 ~ 17933328 (-) True G99942
AMCG00015711 mRNA downstream 34677 17337333 ~ 17488602 (-) True AMCG00015711
AMCG00015712 mRNA downstream 190548 17331652 ~ 17332731 (-) True AMCG00015712
AMCG00015704 mRNA downstream 391504 17127907 ~ 17131775 (-) True AMCG00015704
AMCG00015702 mRNA downstream 504897 17006122 ~ 17018382 (-) True AMCG00015702
AMCG00015693 mRNA downstream 845688 16651198 ~ 16677591 (-) True AMCG00015693
AMCG00015717 mRNA upstream 423624 17971120 ~ 18028970 (-) True AMCG00015717
AMCG00015718 mRNA upstream 499695 18047191 ~ 18055915 (-) True AMCG00015718
AMCG00015719 mRNA upstream 523804 18071300 ~ 18072718 (-) True AMCG00015719
AMCG00015720 mRNA upstream 555178 18102674 ~ 18121761 (-) True AMCG00015720
AMCG00015721 mRNA upstream 889687 18437183 ~ 18437479 (-) True AMCG00015721
TU124562 other downstream 987811 16529377 ~ 16535468 (-) True AMCG00015691
TU124478 other downstream 1301124 16221765 ~ 16222155 (-) True G99646
TU124430 other downstream 1420823 16017583 ~ 16102456 (-) True G99605
TU124288 other downstream 1819989 15701078 ~ 15703290 (-) True AMCG00015666
TU124200 other downstream 2262795 15259461 ~ 15260484 (-) True G99454
TU124837 other upstream 290084 17837580 ~ 17837942 (-) True G99939
TU124970 other upstream 1080847 18628343 ~ 18630665 (-) False AMCG00015723
TU125314 other upstream 2427460 19974956 ~ 19976069 (-) False AMCG00015752
TU125431 other upstream 2722333 20269829 ~ 20279644 (-) False AMCG00015761
TU126211 other upstream 7445457 24992953 ~ 25000890 (-) True G101067

Expression Profile