RNA id: AMCG00015720


Basic Information

Item Value
RNA id AMCG00015720
length 4527
RNA type mRNA
GC content 0.37
exon number 7
gene id AMCG00015720
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18102674 ~ 18121761 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTGAGCTGATTGTCAGCAGGCAGTGTAGTTAGAGCTGGAGTTTCCTTTGGGGGCCCAGGCTTTTACTTGGTAGAGGTGGAGATTTACAATCCCACCCAGTCAAACAGCTCCACTGCAGCTCAGACAGACTCTGAGGAGGGGGAAAAACTCTCCACAGGAAAACCGTGAGACACAATGCTCAGCACctcacagcagacacacacaaaccaagTGGGATAACTCCTATACTTTGATACTCTGTTAATTACTCATGTGATGAGATGCAGATGTCTGGTGGCTTTAGCGGAAACTTCATTAGATGGTAACAGGGGAAAAGAACATTTTAGGAAAAGgttcACCTTGAAGAGGATTCTGACTTTGGACTGATTTGTAATTTGAGATTAACGTGGTGAATGACTGTCACGATGAAGTCTACGGTGTTGAGAGTGGTGTTGATGGTGTTCTACACTGCAGGCAGTGGAATGTGCGAGACAGACATTGAGAAACATTTCCCAAACATGACCCAGAtggaaaatgtaactttttctGCCCAGGACCTGAGTTTCCCACATACAAGTCCATCACTGTTCAGTCCACTTTCTACAATTCCATCACAAAATAAGATGGTAAATAATTCACAGATGAAACCATTCATCCCTCCAATGTGCCCTTACAGATCCAGTATCAGGGAATGTTTCAAATATATCAACACTGTGATATCCTGCATCATTTTTGTCGTGGGCATGGTTGGAAATGCCACTCTGCTAAGGATTATCTACCAGAACAAATCCATGAGGAATGGGCCTAATGCTTTGATTGCCAGCCTGGCTCTGGGAGACCTAATCTACATTGCCATTGACATCCCCATCAATGTCTATAAGGTACAGAGCCGTGGCCTCATGGAGTCGAGTGCAAGGAGTTGGGATTCCATTGCTGACGGCAGTAGAAATAATCTCAATATGGGTCCTGTCAATCATCTTGGCTGTGCCTGAGGCTATTACCTTTGACATGGTCACCTATACCTACAGAAACGAATCTCTGAGGTCTTGTATGCTCAGACCAAATTCCACCCTCATGACGtATTACACAGATGCTAAAGACTGGTGGCTCTTTGGGTTTTATTTCTGCATGCCTCTGGTGTGCACAGCAGTTTTCTACACTCTCATGACCTGTGAGATGCTAAACAGAAGGAAGGGGAGTCTGAAAATAGCACTTAGTGAACATCTCAAACAGaGGCGTGAAGTGGCCAAAGCTGTCTTTTGCTTAGTtcttatttttgcactttgttggTTCCCACTGCATCTAAGCAGGTTACTGAAAAAATTGGTGTACAATCAAAATGACACAAAGCGATGTGAACTACTTAACTTCCTATTGGTCCTCGACTACTTTAGTATTAATCTGGCAACCGTGAACTCCTGTATAAACCCCATTATCCTCTATTTGGTCAGCAAGAAATTCAAAAATTGTTTCAAGTCATGTCTATGCTGCTGGTGCTATTCAGGGACTCTGATAAGTAGTATGGTGCCCTTGAATGGGACGAGCATACAGTACAAAACCCAGGAGCCCAACAACCACAACACTGACCGTAGCCTGCACAAGGACAGTGACAATTGAGAGGACCTACTTGGACTGCACTCCAGTACAGACAATTCCTATACGCAGTTGTCTGTACTAAGAGAATGAGTTAAGGCTGTCTCCAATGCCAGAGAACATGCACCAACAGCTGCAAGGAAAACACCATAAATGACCAAAAACACTGTCAATTACCAGATTATTACAGCACTTATCCAGCAATCTCAGGTTCAAACATctgatgcaaaataaattagaacCATGGCTTTTTCGGGATGGATGCAAGGAATCGTAGATGATCCACTATATAAGTATAatcaattatgtaaatatatttttagaacatCATCGAGCTTTGAATTCCTGAATGCAGACAACAATTCTTCAGATTGTTTTGAGATTGTTGGTTAAATAGACCCAGTAAATAGAagatctgagatggacagtcaTTTGTAACAACCATGATGATGTGAGTAAATGGATGGAGTGTGAACAGAAGAATTGTGCAGGAGCTCCATCCCTGCTCACTTCTGAACAGTTACCTTctctcaaaagaaaaaatagccCTGCGGTggctttttaataaatgaatcctggtaaatataaataacaaaattatataaatacatacatgcagtatgtacagtatatgcacTTTTAGTTTAATGAACATGAATTCAGGAATACTGTAACTGAATAAGTGTGAGgcttgtctttgtgtttgttagaTAATGTACTTTGCATGTGAATGGGTGCAATTTAGAGTGTCAAAACAGAAGTATTATACCAGAAAGTATTACAGAATTAAGTGTAATAAGTCTTCTAATAATTTGACTGTCCttataatatgtttaaaactgtattttactaattttccataaactatatatatatacatagtgaAATAAGTTATGTTTTATTCACATTGAACGAAAAGGTTGTATTTTACCTTGAGAATCCTAAAATTGTCAAAAATGCTCTGTTACAAAAATTCAGTACTGTACAGAAAGTCAAATTGCATTCATGTaattttctcattaaaataatacagataagCTAGAGATTGCTAGGTTGATATCGAATTCCTCAcatatgtaaacaaaacaaaggatcAAAGCAACCCCATTTTGAAAGCAGAGGGATGGTTTCACAACCTGTGGACCAAAAGTCTAAGActtgaaatatttgttaaaGTTTAAACAGAAGGAAAAAGCCAAATTAATAAAGGGAAATTAGTTCATGGCTACTTTTACGTGCAAAATACTATTTTGGTCATGACAGCTCTGCGTCCTAGTTATATGTGAGTTTACTTTAGAAACAGAAATTGGCCTTCAgttttttaagatttatttacatGTCACTGAACGTGCTGAAGCTAGTTGTGTTCgataaattatattattcaaataatgaaaagggGTGTTAAGCCTGTCTGCTGGATGCCGAGGGCTTGTAGTTAAAATAACTTAGTAAAATCTAGAATTATTGCCACAgataagaaagaagaaaaagaagaatatACCGAATCTACTATTAGTACTGCTAGCCTATTTCTCCAAGCAATCTGTCTACTGATGGTTActggggaagggagggaggtTGTTCATTCAATCCTGCAAGATTAAGGCACACGACAATGTGTCCAAGTCACTGTatgatcaaacaaaaataacaaaacatatttgctctaTAGCCAAGCAAATCACTATTATGTCTAacaggaaaacaacacattaaagtGTATAAAAGTACAACACATTAAAGTACAACTATGCAAGGAAATCTGCCCAGTAGACCTGGGTGGGTGTACTCTCAGATGTGGTGCAAGTTTAAGACATCTTAGGAGAAGaactgtacattattattattgttattatgaacTTGCATTGTTTAGAGTCACACAGATACTTTACTTTTCTGAAGTATTGACATTTCCCTTATATTGTGCAATGCTATTATTTCCCTATTGAGAGAAAAATTAATGGAACAACTGTAACTTATTTATCCTACAGATATGTCTGTGTTCAGTCCAAACCTGTAAGTAAAACCCTACGTCCAAACAATAATGGTGTAAAACTACACACTGCAAATATATACCACAATATAATATACCATCacttgtatttacatttttataataaggTAGAATCAAATTAATCCAAATTacacaatacagaaatacattactCTGCCCTGCTTCTAATGGACTGGAAATGTGTTGACTAATGGGAAGCTAAAGGGACCTCATTAATACGCCCActaatgaaaatcaataaacagtgtaaagcaaaaatgtgaaaagtatGGTTTTCAAAATAGAATTATTTTCTATGACCAagatggtgttttgtttttcgtaAACATTTATGTTTGTCCATGTAAATCATGCTTTGGGTCACGTTTAAAACTTTTTGCTTTGTTAAACATCAACATTTATGTATTGCAAATAAGgttttgactgtgtgtgtgttctagtCAAGGACTGGAGCAGGATGATCATGCTTGGTTAAATAATGCAACAGAGCAGtagtacacaaatacatatatatacccACAATGCAGTCAAAAGTATTTACACCCTTCATCTGAAACAATGGTATTTGGTTATTCAATAagcttaataaaaaatgttaattaaactatactatAAAGATTTCAGTCAAGTAAACATCATTGTTTCAATATTAAAGGTGTGAATAATTTTGACTACAAttccatgtgtgtgtgggtgcatgcatgtgcatgtgtgtatattttgttgtgtggtAAAGTAAGTATGCAGGCATAAATAGAAGTTAAATCtagttttatattaattcaatttatgTGAGTGTAAGAAGTAAtgcacttttcattttatatattactaAATGGCATGTAATCCCTCCTTTCTGAATTcatttgtgtaaatgtttctagaaaaatgactgaaaatgttCCAGgttcatgttttttgaaaagAGAGAAACTT

Function

GO:

id name namespace
GO:0086100 endothelin receptor signaling pathway biological_process
GO:0048484 enteric nervous system development biological_process
GO:0008217 regulation of blood pressure biological_process
GO:0042310 vasoconstriction biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004962 endothelin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124847 lncRNA downstream 145187 17952758 ~ 17957487 (-) True G99944
TU124844 lncRNA downstream 145187 17955007 ~ 17957487 (-) False G99944
TU124840 lncRNA downstream 169346 17933000 ~ 17933328 (-) True G99942
TU124839 lncRNA downstream 197218 17905037 ~ 17905456 (-) True G99941
TU124835 lncRNA downstream 298755 17802158 ~ 17803919 (-) True G99937
TU124906 lncRNA upstream 22515 18144276 ~ 18144517 (-) True G99997
TU124934 lncRNA upstream 223473 18345234 ~ 18399021 (-) True G100019
TU124955 lncRNA upstream 394690 18516451 ~ 18516729 (-) True G100038
TU124956 lncRNA upstream 438954 18560715 ~ 18560947 (-) True G100039
TU124957 lncRNA upstream 469691 18591452 ~ 18598196 (-) True G100040
AMCG00015719 mRNA downstream 29956 18071300 ~ 18072718 (-) True AMCG00015719
AMCG00015718 mRNA downstream 46759 18047191 ~ 18055915 (-) True AMCG00015718
AMCG00015717 mRNA downstream 73704 17971120 ~ 18028970 (-) True AMCG00015717
AMCG00015713 mRNA downstream 555178 17523279 ~ 17547496 (-) True AMCG00015713
AMCG00015711 mRNA downstream 614072 17337333 ~ 17488602 (-) True AMCG00015711
AMCG00015721 mRNA upstream 315422 18437183 ~ 18437479 (-) True AMCG00015721
AMCG00015722 mRNA upstream 315979 18437740 ~ 18439149 (-) True AMCG00015722
AMCG00015724 mRNA upstream 479471 18601232 ~ 18617687 (-) True AMCG00015724
AMCG00015723 mRNA upstream 505844 18627605 ~ 18630136 (-) True AMCG00015723
AMCG00015729 mRNA upstream 618299 18740060 ~ 18770335 (-) True AMCG00015729
TU124837 other downstream 264732 17837580 ~ 17837942 (-) True G99939
TU124562 other downstream 1567206 16529377 ~ 16535468 (-) True AMCG00015691
TU124478 other downstream 1880519 16221765 ~ 16222155 (-) True G99646
TU124430 other downstream 2000218 16017583 ~ 16102456 (-) True G99605
TU124288 other downstream 2399384 15701078 ~ 15703290 (-) True AMCG00015666
TU124970 other upstream 506582 18628343 ~ 18630665 (-) False AMCG00015723
TU125314 other upstream 1853195 19974956 ~ 19976069 (-) False AMCG00015752
TU125431 other upstream 2148068 20269829 ~ 20279644 (-) False AMCG00015761
TU126211 other upstream 6871192 24992953 ~ 25000890 (-) True G101067
TU126708 other upstream 10040076 28161837 ~ 28257732 (-) True G101456

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01078627_00000232_00001689.mRNA True 594 mRNA 0.44 3 CI01078627 232 ~ 1902 (-)