RNA id: AMCG00015723


Basic Information

Item Value
RNA id AMCG00015723
length 1379
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00015723
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18627605 ~ 18630665 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTCTCCGAAAGCAAACGCCCAGTGACTTTCTGAAGCAGATCATCGGGAGGCCGGTGGTGGTGAAGCTCAACTCCGGGGTGGATTACAGAGGTGTCCTGGCTTGTCTGGATGGGTACATGAACATCGCCGTGGAGCAGACTGAAGAATATGTGAACGGGCAGCTGAAGAACAAGTATGGAGATGCTTTTCTGCGAGGAAACAATGTGTTATACATAAGTACTCAAAAGAGGAAGATGTGACATGGAtgctttgtttgatttacttttttgttatgtttttagttCATGTACGATCgggagttttttttgtttctttttcccttcTCCTTGCTTTCCCCCTCCATCATCCATtctgattttgaaatgttatcAAAGTGAGTATTATCTACCATACAAAAGCTGAGGTGAACATTTTAAGAACAAACTGAATGAAACAAATGTTCATTGCAGAGCTCCTTTCGGGGGGCTGCACAGTATAGCTGTCCCCTGCGAGGATGTGAATTGACGGACTCGGCTGGGGTCGATTTGTGTTCCAGTGCAGCTCATGGTCTGGCACAGTGGTGAATAAATGCCCTGGAGTTTACTTTGTGTTTCCAACTTCAATTGGTAGTTGATGTAACCACctgaaatttaattaaatgacaatttgtttataaaattgtgttttagtCTCTGTGGGTGTCAATCTGAAATGGCTTGCGTTCTTTTGTAGTCAATGTGGTTTCTTGGATCAACTGTACTTTTATCACTGGAATAAGACTGTGTGAACTGAATGGGATTGCCAAGTATAAGAGATGTACTGTCAATACTAATCTACCTGGAACAAGAAAGAAGCCTTAATTAGTGGGTTTTGCTAGATGGGAGCAGGTCTTGTGATCTGTTATAGAGTGACATTTAAGCTCTAGACCTTGGTCTTCTAGGGCTTCCTGAAAGATGAATACACTTCTGTCACTACCATGTGCAAGCAAATGTAGGAAAACATTGTGAAAGCTTTAGAAGTCACATTTGCTTAATATAGACTTGGTTTACACTTGTATTTATCATACTATCTGCTGGATATGCATTTGTATGGGGAGAAAATTCTGAATGCAGTTTTGAACTAGAACCATTGATCTCAAAATTTGAAAGTTACTGCTGTCTGTAGATAACCATCTCTCccaaaatggttttaatatttattgtaatagtTCATCCCAGTAcaagaaatgcaataaatatggATTCATTACTCTCCTAATGAGCTTTTGTAAATGCAAGCAATGTTCAGCCAAGATTTATATCGCTGGGATGACAGTTTTATAAAGAAAGGACTGGATGCCTATGCATATTCTCTGTTCAAGAAAGACAAAGCCTTCAAGGTCAGACTTAACCTCAGG

Function

GO: NA

KEGG:

id description
K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124957 lncRNA downstream 29409 18591452 ~ 18598196 (-) True G100040
TU124956 lncRNA downstream 66658 18560715 ~ 18560947 (-) True G100039
TU124955 lncRNA downstream 110876 18516451 ~ 18516729 (-) True G100038
TU124934 lncRNA downstream 228584 18345234 ~ 18399021 (-) True G100019
TU124906 lncRNA downstream 483088 18144276 ~ 18144517 (-) True G99997
TU125050 lncRNA upstream 106320 18736456 ~ 18737039 (-) True G100102
TU125060 lncRNA upstream 169434 18799570 ~ 18806676 (-) True G100109
TU125149 lncRNA upstream 502224 19132360 ~ 19132566 (-) True G100185
TU125203 lncRNA upstream 994924 19625060 ~ 19699829 (-) True G100218
TU125204 lncRNA upstream 1033779 19663915 ~ 19699829 (-) False G100218
AMCG00015724 mRNA downstream 9918 18601232 ~ 18617687 (-) True AMCG00015724
AMCG00015722 mRNA downstream 188456 18437740 ~ 18439149 (-) True AMCG00015722
AMCG00015721 mRNA downstream 190126 18437183 ~ 18437479 (-) True AMCG00015721
AMCG00015720 mRNA downstream 505844 18102674 ~ 18121761 (-) True AMCG00015720
AMCG00015719 mRNA downstream 554887 18071300 ~ 18072718 (-) True AMCG00015719
AMCG00015729 mRNA upstream 109924 18740060 ~ 18770335 (-) True AMCG00015729
AMCG00015730 mRNA upstream 145224 18775360 ~ 18783878 (-) True AMCG00015730
AMCG00015732 mRNA upstream 199931 18830067 ~ 18839249 (-) True AMCG00015732
AMCG00015733 mRNA upstream 230125 18860261 ~ 18862808 (-) True AMCG00015733
AMCG00015735 mRNA upstream 246352 18876488 ~ 18919607 (-) True AMCG00015735
TU124837 other downstream 789663 17837580 ~ 17837942 (-) True G99939
TU124562 other downstream 2092137 16529377 ~ 16535468 (-) True AMCG00015691
TU124478 other downstream 2405450 16221765 ~ 16222155 (-) True G99646
TU124430 other downstream 2525149 16017583 ~ 16102456 (-) True G99605
TU124288 other downstream 2924315 15701078 ~ 15703290 (-) True AMCG00015666
TU125314 other upstream 1344820 19974956 ~ 19976069 (-) False AMCG00015752
TU125431 other upstream 1639693 20269829 ~ 20279644 (-) False AMCG00015761
TU126211 other upstream 6362817 24992953 ~ 25000890 (-) True G101067
TU126708 other upstream 9531701 28161837 ~ 28257732 (-) True G101456
TU126809 other upstream 10474093 29104229 ~ 29106160 (-) True G101540

Expression Profile