RNA id: AMCG00015730


Basic Information

Item Value
RNA id AMCG00015730
length 678
RNA type mRNA
GC content 0.62
exon number 3
gene id AMCG00015730
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18775360 ~ 18783878 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACGTCACCAGCCTGTTCTCCTTCACCAGCCCGGCGGTGAAACGACTGCTGGGCTGGAAGCAGGGCGATGAGGAGGAGAAGTGGGCCGAGAAGGCGGTGGACGCGCTGGTCAAGAAACtcaagaagaagaagggggctatggaggagctggagaaggcTCTCAGCTGCCCAGGACAACCCAGCAACTGTGTCACCATCCCACGCTCGCTGGACGGCCGGCTCCAGGTGTCGCACCGCAAGGGCCTGCCCCACGTAATCTACTGCCGCGTGTGGCGCTGGCCTGACCTGCAGAGCCACCACGAGCTCAAGCCCCTGGAGTGCTGCGAGTACCCCTTTGGCTCCAAGCAGAAGGAGGTCTGCATCAACCCCTACCACTACAAGCGAGTGGACAGTCCTGTGCTTCCTCCAGTTCTGGTGCCAAGAAACAGCGAGTTCAACTCCAAGCACAGCCTCCTGCCACGGTTCCGCAACCCCATCCAGAATGATCCGCACATGCCGCACAACGCCACCTTCCCGGACTCGTTTCCCCAAGCCAACACCCACCCTTTCCCCCACTCCCCCAACAGCAGCTACCCCAATTCACCAGGCAGCGGCAGTGGCAGCGGCGGCACCTTCCCACACTCTCCGGCCAGCTCCGACCCCGGGAGCCCATTCCAGATACCAGAGAGTCTGTGA

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125050 lncRNA downstream 38321 18736456 ~ 18737039 (-) True G100102
TU124957 lncRNA downstream 177164 18591452 ~ 18598196 (-) True G100040
TU124956 lncRNA downstream 214413 18560715 ~ 18560947 (-) True G100039
TU124955 lncRNA downstream 258631 18516451 ~ 18516729 (-) True G100038
TU124934 lncRNA downstream 376339 18345234 ~ 18399021 (-) True G100019
TU125060 lncRNA upstream 15692 18799570 ~ 18806676 (-) True G100109
TU125149 lncRNA upstream 348482 19132360 ~ 19132566 (-) True G100185
TU125203 lncRNA upstream 841182 19625060 ~ 19699829 (-) True G100218
TU125204 lncRNA upstream 880037 19663915 ~ 19699829 (-) False G100218
TU125208 lncRNA upstream 887864 19671742 ~ 19701459 (-) True G100222
AMCG00015729 mRNA downstream 5025 18740060 ~ 18770335 (-) True AMCG00015729
AMCG00015723 mRNA downstream 145224 18627605 ~ 18630136 (-) True AMCG00015723
AMCG00015724 mRNA downstream 157673 18601232 ~ 18617687 (-) True AMCG00015724
AMCG00015722 mRNA downstream 336211 18437740 ~ 18439149 (-) True AMCG00015722
AMCG00015721 mRNA downstream 337881 18437183 ~ 18437479 (-) True AMCG00015721
AMCG00015732 mRNA upstream 46189 18830067 ~ 18839249 (-) True AMCG00015732
AMCG00015733 mRNA upstream 76383 18860261 ~ 18862808 (-) True AMCG00015733
AMCG00015735 mRNA upstream 92610 18876488 ~ 18919607 (-) True AMCG00015735
AMCG00015738 mRNA upstream 326938 19110816 ~ 19125482 (-) True AMCG00015738
AMCG00015739 mRNA upstream 348931 19132809 ~ 19154312 (-) True AMCG00015739
TU124970 other downstream 144695 18628343 ~ 18630665 (-) False AMCG00015723
TU124837 other downstream 937418 17837580 ~ 17837942 (-) True G99939
TU124562 other downstream 2239892 16529377 ~ 16535468 (-) True AMCG00015691
TU124478 other downstream 2553205 16221765 ~ 16222155 (-) True G99646
TU124430 other downstream 2672904 16017583 ~ 16102456 (-) True G99605
TU125314 other upstream 1191078 19974956 ~ 19976069 (-) False AMCG00015752
TU125431 other upstream 1485951 20269829 ~ 20279644 (-) False AMCG00015761
TU126211 other upstream 6209075 24992953 ~ 25000890 (-) True G101067
TU126708 other upstream 9377959 28161837 ~ 28257732 (-) True G101456
TU126809 other upstream 10320351 29104229 ~ 29106160 (-) True G101540

Expression Profile