RNA id: AMCG00015991


Basic Information

Item Value
RNA id AMCG00015991
length 9648
RNA type mRNA
GC content 0.67
exon number 20
gene id AMCG00015991
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 32639771 ~ 32676388 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGGCTCCGCAGTGCGCACCTCTGCGCTCGCTGCGCTGGTGCTGGCAGCCGTGCTGTGCGCTCAGTGCTCCGGCCAGGTGTACAACCTGACCCTGTCTATCGAGGAAGGGCTGCCGGCCGGCACCATCGTGGGGGACATCAGGGCCGGGCTGCCGGAGGACACCCCCCACAGCGGCTTCTTCATCTCGGAGAGCAGGGAGTCCGACGTGTTCAGAGACCTGGACATCGACGGGGACTCGGGGATCATATCCACCACGGCGCCGCTGGACCGGGAGAGCAGGGACCGCTATGAGTTCGTGGCGGCCACCCTGACGGGGGAGGTCATCAGGGTGCAGATCTGGGTGCGAGACGTGAACGACCACGCACCCGTGTTCCCCCGGGCTGCCCTGCAGCTGGACGTGTCAGAGCAGAGCCCGGCCGGGACGCGCTTCCAGCTGGAGCGGGCGCGGGATCAGGACGAGGGCGAGTTTGGGATCAGCGGGTACCGCATGGTGGGTGCGGTGAGCTGGGGGCCCTTCCAGCTGGACTACAGGAAGGGCGGCAGCGAGGTGTTCAGCCTGGACCTTGTGCTGTCCGGCCAGCTGGACAGGGAAGCGGTGGACGCCTACTCCCTGGTGATCGAGGCGTTTGATGGGGGCAGCCCTCCGAAGACAGGTCGGCTGCGGGTGGAGGTCAGCGTCTTGGACGAGAACGACAACCCGCCCGCCTTCAACCAGACGGAGTACCGGGCGCTGGTGTGGGAGAACGCCCCTCCACTCACACCCGTGTGCCAAGTCTTCGCCACAGACCGGGACCTGGGCCTCAACGGCCGGGTTGTCTATGAGATTAACCGGCGCCAGAGCGACCCCAGGGAGCTGTTCGCCATCGACGGCAGCACCGGGGTCATCAGGGTCAACAAGCCGCTGGACTACGAGACGCAGCCATTCCACGAGTTGATCGTCCGGGCCCGGGACGAGGGCGCCCAGCCGGAGTACGCCACCACCCTGGTGGTGGTGAAGGTGCGAGACGTCAATGACAACAGCCCGTCCATCAGCGTAATGTTCCTCAGCGAGTCCGCGGAGCCCGAGGTGTCTGAGGGGGCGGCCGTGGGGGACTATGTGGCCCGGATTTCGGTGTCTGACCCGGACCTGGGGGACAGTCCGGGGCTCAGAGTCTCTCTGGAAGGCGGCGAGGGACACTTCGCCCTGAAACCATCCGACAACTTCCTGTACTTCCTGTGTGTGGACGGGCCGCTGGACCGGGAGGCGGTGGACCTGTACGAGCTGAAGGTGGTGGCCGCTGACCTGGGCTCCCCACCGCTGTGGAGCGAGAGCACCTTCTTACTCAGGGTGACGGACGAGAACGACAGCCCCCCGGCCTTCACGGAGGCGCGGTACATGGTGAGCGTGCGGGAGAACATGGCGCTCGGGACGGCTCTGCTGCAGGTCCACGCCCGGGACCGGGACGAGGGAGTCAACGCCGCTGTCCACTACTCCATCGCGAGTCTGGACCGGCCTGCCCTAGTCAGCATCGACGCTGCATCGGGCCTGATCACCACAGCGGCGCGGCTGGACCACGAGGAGGTCGCCGTAATCCGTTTTGTGGTGGTGGCTGAGGATGGGGGCAGCCCTCCGCTGTCCTCGACGGCCGCGGTCACCGTCCACGTGGAAGACATCAACGACAACAAACCCGTGTTTGAGCGCCAGCTGTACAACGTGTCGATCCCAGAGCACTCGCCTGTCGGGAGCTGCTTCCTGCAGGTAAGGAAACGGGCCGCCGTGGGGGAGGCAGCTGTGGTCTCCTGTGCtgagttttctttcctgtcctgtcctgtccatCCCCACACGCTGTCTCTGCTCTCCCCACAGGTGACGGCCACGGACGGTGACAGCGGCGCATTCGGTGCAGTTCGCTACTCCCTGTATGACGGCTTCAGCAACCACGACCCGCCGCAGCTCTTCCAGATCCGGCCCGACTCCGGTGAGCTGTGTGTGTCACGGGACGTGGACAGAGATGGGGGGCTGGCCAGCCACGATGTCCTGGTCAGAGCTGAAGACGGGGGTGGGCTGAGCGCTCAGACGTATGTTCACATCAGTGTGGAGGACATCAACGACCACCGGCCCGTCTTCAACCCCGACAGCTACGTCACCAGCGTCAGCGGCCACGCGCAGCCCGGCACCGAGGTCCTGCGCGTCATCGCGGCCGACGGGGACTCGGCGGAGTTCGGCCAGGTGACCTACGAGATCGTGGCGGGCGACCTGTCGTCCCCGTTTGCCATGGACTCATCTACAGGCGTCCTCTACCTGACCTCGACCCTCAGCCACCTGGGCGCCTCAAGCGTGAAGCTGTCCGTCTCTGCGCGGGACGGGGGTGGGCAGCTCAGTCCGGCCCCCGCCTCCATCACTGTGCACATCCTGCGCAGCGGCCTGGAGCCCGCTGTGTTTGACCGGCCACGCTACTCCTTCTCCGTGCCCGAGGACGCTGCCCCGGGGACCAGCGTCGGCACTGTGAGGGCCACCAGCCCGGCCAACTCCCTGGAGTCCCTGTCCTACCGCATCTCCTCAGGGGACCCCCTCGGCCTGTTCTCCATCCACCCCCAGTCTGGTGTCCTCAGCACGCGCCGGCCGCTGGACCACGAGGCACGGCCGTCCCTCAGCCTGGTGCTGCAGTGCCAGAGCGGCTCGTCCCCGGCCTACAGCAGCACGGAGGTCCACGTCTCTGTCAGCGATGTCAACGACAACCCGCCCGTATTCCTGCCGGTGGCCGAGTCCATCTCGGTGACCCAGGGCACAGCACCGGGTGCGGTGCTGTACGTGGCCCATGCCCACGACCGCGACAGCGGCACCAACGGCAGGGTGCGCTACTTGCTACGGGGGGGTGACTCCGCGGCGTTCGCCATAGACCCCCGCCTGGGCACCCTGACCCTGGTGCACAGCCTCCCCCCGGACGGCCCGCCGCGCTATGGCCTGACCATCGTGGCCGAGGACGAGGGCGCCCCCCCGCTGAGTGCCACAGTGGGCCTGTCGGTGAGTGTGGAGCGGGCCGCGCCGGACGCTCTGGCCTTCGAGACGCTGGTGTACCAGGTGGAGATCGGCGAGAGCACCCCCCCCGAATCCCGCATCATCCAGGTCCGGGCCCACGGCCGATGGCCCCACAGCCCGCCCAGCCTGTCCTACTCCCTGCGGCCCGACGCTGGGGCCGCACCATTCGATATCCAGGCGGAGAGCGGCTGGTTGTTCCTGCGCCGGGCTCTGGACTTCGAGGCGTCCCGGGGCGTGCGTTTCAGCGTGGTGGCCTCGGCCCGGGAGGGGGGGGTGGCGCTGTTCGCCACGGCCACGGTGCTGGTGAAGGTGCTGGACGAGAATGACAACGCGCCCGTGTTCCCGCGGGACGCATACTTCTTCACTGTGCAGGAGGGCCCCGTCCCGCACGGCCTGGTCGGCACCGTGGCCGCCTCCGACCGGGACTCCGGCAGGAACGCCCAGCTCTCCTACATCTTGCTGTCGGACGGGAAACACTTCCGCATCGACTCCAAGACCGGCGAGATCATTAACTGGGTGGCTCTGGACCGCGAGCTGCAGCCGCACCACTCCCTGACTGTGCTGGTGACGGACCACGGCCTCCCGCGCCTCAACGCCAGCGTGGCCGTCCACATCCTCGTCACCGACGTCAATGACAACCCGCCGCAGTTCACCCGCCTGTCTGCCGCCAGGGAGCTCACGGCACAGGTGTGGGCTGGCCAGCCTGCCGGCACGGTTGTTGCCACCCTGTTTGCCAAGGACTTCGACTCTGGAGACAACGGGACCGTCCTGTACACGCTGAGTTCAGAGGATGGGCCGGGGCATTTCCACATCGACGGCAGCACCGGAGAAATTAAGACGACGGACAGGTTTTCCCAGCGACCCAGAGCTCAGTACAGCCTATCGGTGATGGCCAGAGACGCCGGGTCGCCCCCCCTGCAGCAGAGCGCCCTGGTGCACATACAGGTGCTGCCGAACTCCGACCAGGGGCTCCTGCGCTTCTCCGTGAGAGAGGACTCCAAGCCTGGCACAGTAATCGGATCAGCGCGGTTCCCCGAGGCCCGTGGCGGGGACTTCGTCTACGCCATCGCGGAGGGCGACGGGAGTGTCCACTTCGGGATCGACGGCTCCTCGGGGGACCTGTACCTCTCCCACGAGCTGGACTACGAGACGGCCTCCCACTACCTGCTCAAGGTGGTGGCAGAGGACCGCGGCCAGGCCCCCATGCTCAACGCTTCGGTGTTCGTTAGCGTCGCCGTAGAGGACGTCAATGACCACGCGCCCTGGTTCCCTGGTGACGTGCTGgtgtttggggtggaggagaACCTGCCCGTCAGCACCGCGGTCTACACCTTCAAGGCCAACGACGGGGACGGTAGCTTGGCCAACAGCGTCCTGCGCTACTCCCTCACCTCCAGCAGCCCAACGGAGACCCCCTTCCTCCTGGACCCCCTCACGGGGACCCTCAGCACCGGCGCCACCATCGACCGCGAGGAGGTGGACAGCTGGGTGCTGACCGTGATGGCCACCGACCAGGCGGCGGACCCCCAGAAGCGCCGCCACGCCTCTTTGACCACACGCATCGCCGTGCTGGACCGGAACGACAACGCCCCCAGCTTCGTGTCCGCCAGCGTGGCCCAGGCTGTGGAGGATGCCCGGCCTGGGTCTCTGGTCCACCACGTCATCGCCAGGGACCGGGACTTGGGACAGAACGGCAGGGTGGCCTACAGAATCCTGTCGGGTAACGAGAAGGGAGTCTTCGCCCTGGAGGAAACAACAGGGCTGCTGTCCCTGGCCTCCACTCTGGACTACAAGGTGGACGGCTTCTTCTCTCTGGTCATCCAGGCGCGGGATGGCGGGACCCCCCCACTCTCATCCTCTCAGACACTGCGGGTGACTGTGGTGGACGTGAACGACGAGGCGCCGGTCTTCCAGCAGAGCGTCTACAGAGCCACCGTCCCCGAGAACCAGCCGCCGGGCACGCTGGTGGTCAGGGTGGCAGCGATCGACGGGGACTCGGAGATCAGCACAGCCGCAGCCCTGGACAGAGAGCGGCAGCCTCACTTCACCCTGAGAGTGCTGGGTCGAGATAGCGGAGTCCCGGCCCTCTCCAGCACCGCCACGGTCCTGTGCTCCATCCTGGATGAGAACGACAGCTCCCCCGAGTTCACACTGCCCTCCCTGGTGGTGCGTGTCCCGGAGAACCAGCCGCCCGGCGTCATCCACCTGGCACAGGCCTCTGATGGCGACGCTGGCGAGAACGGCACCCTGGAGTACCGCATCTCAGGTGACGATTTCGGAGGTGGTTTCGTTGTCAATGCCACGACGGGGGCGGTGTCAGTGACCCGGGAGCTGGACCGGGAAGAGCAGGACAACTACACTCTGGTGATCGAGGCCTGGGATGGGGGGGATCCTCGCCGGAGCTCCACGGCCACACTGCTGGTCCATGTGCTCGATGAGAACGACAACAGCCCGACGTTCGGTCGGCAGCAGTACCGCGTGTCGGTCAGCGAGGGGCTGCCGCTGGGGGCAGAGGTGCTGTGGCTCAGCGCTAGTGACCCGGACGAGGGCCCCAACGGTCGCGTGTCCTACTCCCTCACCGGTGACATGCTGGGCACGTTCACCGTGGACAGTGTGTCCGGCCAGGTCAGGACCGCGCGGCCGCTAGACCGGGAGAGCCGGGCCCAGTACGTGTTCCGGGCGGTGGCGATGGACGGCGGCGCGCAAGGCCCCCGCAGCAGCACGGTCAGCGTCATGGTGCACCTGGACGACGTCAACGACAACGCGCCGCAACTCCTGCAGAACCTCGTGCGCGGCTTCCTCTCCGCCCACACCATGCCCAACCAGACCGTGGCCACCGTGCGGGCGGACGACAGTGACCTGGGCCGCAACGGGGAGGTGCTGTTCTGCCTGGCGCAGCCCGACCCCTTGTTCGAAATCCATCCCCGCACTGGGGACGTGTGGCTGAAGAGCCCCCTGCCGCCCGGGTACTACGGCACCAGGCTGCTGCAGGTCATCGCGGCGGACCAGGGTGAGCCAGCGCTGTCCTCCACCGGCCTGGTGCTGCTGCACCTAAGGGGCGAGGAGCCGGCACTGTGGTTCACAGAGACCGAGTACGAAGCCACCATCCCTGAAAACAGCAAAACCGGCTCGCTGGTTGTGACCGTAGCCACTCAGGACCAGGGCTCAGGGAGGAGGGGAGTCAGGTACAGCATCCTCAGCGGCAATGAAGACGGGGCCTTCGCTCTGAATCCTCACACTGgggCCGTGTCGGTGAAGGAGCCGCGCTCTCTGGACTTCGAGCGGAGGAGTCATGTGCACCTGGTGGTCCTGGCCTCTAGCGACTGGGGCACGGCGCACTGCCGGGTGAGCGTGGCGCTGCAGGACGTGGTGGCCACCGATGCCGACACCGGGCCAAACAGACAGCTGGAGTACTCCATCCTGTCGGGGAACGAGAATGACGCCTTCCTGCTCGACTCGGTCAGGGGCATCCTGGCCACCAACGCCATCCTGGACCGCGAGATCGTGCCGTCCTACAGGCTGGTCCTGCAGGCCGTGGACGCAGGGGACCCCCGGCTCACCGGCACCACCACGGTCCGAGTGCAGGTGGTGGACGTCAACGACAACGCGCCGGCCATCCCGCCCATGGAGCCTGCTGAGATCGCCGAGACCAACGACGTGGACCTGGGCTCTACGCTCACCTACCGGTTCTCGGAGGATGGGGACGCCAGGGGCAGGTTTGCCATCGACCGCTACACCGGTGTGGTGACGCTCACCGGCCCACTGGACTACGAGGAGGGCTCTCGGTACCGGCTCCGGGTCCGGGCCTCCGACTCAGTCCACCACACCGAGGCGGACTGCAGCGTCCTGGTGCTCGATGTCAACGACAACCCGCCTGCCTTCTCCCAGGACTCCTACCAGGTGGTCCTCCCAGAACTGACCCCCGAAGACACGTTCGTCCTGGCGCTGACGGCCACGGACAGGGACTCCGGGCTCAACGGGGACATCTCCTACCGGCTGCTGTTGCCCCGGGACAAGGGCTTCTACATCAGCGCGGAAAACGgttCCCTCTACACGGACAAGCCGCTGCGGTTCCTCACCGACAGCAGTGTGGTTCAGCTCCTTGTGGAGGCCAGGGACGGAGGGGACCCCCCGCTGACCGCCGTGACCTCGGTGGAGATACACATCCAGGACGCCAATGACCATGCGCCCCGGTTCCAACAGGCCGCTTACCAGGTCAGTGCCGCGGAGGACACCAGCGTGGGAAGCACCCTGCTGTTCCTGTCCGCCAGCGATGAGGACCGGACCCCCGAGAACGCCTTCCTGGACTACAGCATCGTCAGCGGAAACAAGGAGGGCCGCTTCTGCCTGGAGGTCAGCGCAGTGCCGACGGAGGCCCGGCCGGAGTGCGTTGCCCGGCTGGTTCTGTGCGGCTCTCTGGACCGCGAGACCACGGGCAGCTACACACTGGTCGTCTTGGCTTCGGACCGGGGGGCGCCGGCCCTGAATGGCTCTGTGGTCGTGTCGGTGACCGTGCTGGATGTCAACGACAACGCGCCCGTGTTCGTGAGCCCGGAGTATCGCGTGGAGGCGGGAGAGGGCAGCCCGCAGGGCTCCAGGCTCACGCAGGTGTCGGCCCGGGACGCAGACCTCGGCGCCAACGCGGAGGTGAGGTATGACATCGTCTCCGGCAACAGTAAGGGCCTCTTCCGGCTGGACCACCGTAGTGGCGCCTTGGAGGTGAACCGGAGCCTAGACTATGAGGAGGATGCCTCGTTCACGCTGACGGTGCAGGCGGCCGACGGGGGTCGGGCCAGGGCGGGGAAGGTGGCCTTCGCTGTGATTTATGTCTCCATCCTGGACGAGAACGACAACTCGCCCTACTTCGCCTTCCCCGAGGTGAACTGCTCCATAGTGGAGAACCAGCCAGCCTTCTCCCCCGTCTGTGCCGTGCGGGCGCTGGACGCCGACGCCGGCCCCTTCGGCCAGCTGAGCTACTCTGTCCTGTCGCCCTGCTTCACCGACTACGGCAGCCCCGGCAGGAAGGAGGCCTTCACCATCGACCCGCTCACAGGGGACATCCAGACCCGGCAGGCCTTCGACTACGAGCGTGAGAGCGAGTACTGCCTGGTGGTGCAGGCGGCCGACACGGGCGATCAGACGGCCACGGTGAGGGTCCGCATCCACATCGAGGGCGTCGATGAGTTCAGCCCCGTCTTCACTCAGGACCTGTATCAGTTCGAGCTGCCAGAGAAGTCGGAGGTGGGCCAGAGCGTGGGCCGGGTCGAGGCCACAGACAGCGATGCCGGGCTGGACGGGGCGCTGCTGTTCTCCCTGGCAGAGCCCTCCCTGTTCTTCGCAGTCAACAGGACCAGCGGGGCGATCTATGTGTCCGGCCTGGTGTACCGGCGGAGAGGCAGTCTGAGGAGCAGAGAGGACCTGGTGGAGCTCCTGGTCAGGGTCAGCAGCCCCAAGCCGGACTCCAAATCCACCACCTGCCTGGTGGCTGTGAATGTGTCAAGCTCGGTGGCCGAGGCTTTCACCGGGATGCCCTTCAGCATTCTGAGCATCAGCCTGGGCGTCTCCCTCCTCGTCTTCCTCCTGCTGGTCATCAGCCTGGTGGGGCTCATCCTTAGGTACCGCAGGAAAGATGTCCAGGTCCAGAAGGGGGCCCTGCAGCCCCTGGCAGCCAGCTTGAACCCCAGCACCGACACCTTGAACGGGGCGGGCGGCCATGGCGCCATCGGCCTGCAGGACCTGCGACTCTGCAACAAGAAAGAGGCGGCAAACCTCTGCCGGCACTCGGACTCCAGCGGCCGGGGGTCCGCCGAGGGGGACACGGCTGAGGACGAGGAGATCCAGATGATCAACGAGCATCCCTGTGGAAAACGCTCGGGCTCAGAGCTCAGCGAACGGGCGTCCAGGGTCCCGGACTCTGGCATCCCCCGTGACTCCGACCAGCTGTCCTGCCAGTCTGAGGAAGAGCCAGACCCGAGCGGGGATGTCCCAGCCACAGCTGCCGGCACCGCGAGCTCAGAGAGCCTGCATACCTTCagggaggagggtgggggggaggggatgcTGACGAGGGGCGCAGCGCAGGCGAGGGACGCCGTCATCACGGATGGGCCCGGCCTGTACGCCTTCCAGGGCGGCCAGGTGGCGTCGGGCGGCTCGCTGGCGTCTCTGGTGTGCACCGAGGAGGAGCTGAGGGGCAGCTACAGCTGGGACTACCTGCTGCACTGGGAGCCCACCTTCCAGCCGCTGGCCTCGGTGTTCAGTGACATCGGCCAGCTGCAGGACGAAGCCTCGCAGAAGCGCAACTTCCCAAAGGAAAGCCGGGGCCTCATCTACCCACCTCCGCTGATCACCGCCGTGGCCCAGCCTGGCATCAGGGCCGTGCCCCCCCGCATGCCCACCCTGACTGGCCGGCCCCCTTTCCCCAAGTACGCTCACTCGCCCCTCGGCGGGAACTCGGGCCTCACCCCCACAGCCATGACCCCCAGCTTCTCGCCCTCGCTGTCCCTGCTCACACTGCGGACCCCCACGGCCTCCCCGGTCGTGTCCGAGGCGGGGCTGGGCGCCCCCCCGCAAGTGGCCCCCTTCCACCCCTTCATGGTCCGAGAGGGAGAGATGCAGGTGTAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K16507 DCHS1_2, PCDH16_23; protocadherin-16/23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127580 lncRNA downstream 109177 32530271 ~ 32530594 (-) True G102149
TU127547 lncRNA downstream 249759 32388224 ~ 32390012 (-) True AMCG00015979
TU127508 lncRNA downstream 276908 32362463 ~ 32362863 (-) True G102092
TU127416 lncRNA downstream 683371 31954646 ~ 31956400 (-) False AMCG00015965
TU127414 lncRNA downstream 686123 31952908 ~ 31953648 (-) True G102020
TU127688 lncRNA upstream 21639 32698027 ~ 32698376 (-) True G102237
TU127719 lncRNA upstream 119717 32796105 ~ 32796333 (-) True G102261
TU127744 lncRNA upstream 220427 32896815 ~ 32897014 (-) True G102281
TU127767 lncRNA upstream 267791 32944179 ~ 32944499 (-) True G102302
AMCG00015990 mRNA downstream 35932 32600823 ~ 32603839 (-) True AMCG00015990
AMCG00015989 mRNA downstream 41066 32586700 ~ 32598705 (-) True AMCG00015989
AMCG00015987 mRNA downstream 132291 32499211 ~ 32507480 (-) True AMCG00015987
AMCG00015985 mRNA downstream 182893 32453098 ~ 32456878 (-) False AMCG00015985
AMCG00015984 mRNA downstream 194231 32423128 ~ 32445540 (-) True AMCG00015984
AMCG00015997 mRNA upstream 6027 32682415 ~ 32689889 (-) True AMCG00015997
AMCG00016000 mRNA upstream 28449 32704837 ~ 32705938 (-) True AMCG00016000
AMCG00015998 mRNA upstream 32860 32709248 ~ 32714322 (-) True AMCG00015998
AMCG00015999 mRNA upstream 42838 32719226 ~ 32723542 (-) True AMCG00015999
AMCG00016005 mRNA upstream 85448 32761836 ~ 32772613 (-) True AMCG00016005
TU127555 other downstream 186362 32449500 ~ 32453409 (-) True AMCG00015985
TU127552 other downstream 192806 32443705 ~ 32446965 (-) False AMCG00015984
TU127411 other downstream 694596 31908489 ~ 31945175 (-) True G102017
TU127348 other downstream 1010205 31629248 ~ 31629566 (-) True G101963
TU127312 other downstream 1351978 31267404 ~ 31287793 (-) True G101939
TU127760 other upstream 236150 32912538 ~ 32938058 (-) False AMCG00016006
TU127761 other upstream 240938 32917326 ~ 32922410 (-) False AMCG00016006

Expression Profile