RNA id: TU124934


Basic Information

Item Value
RNA id TU124934
length 402
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G100019
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18345234 ~ 18399021 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gatcttctatcagcttgaatcagtcggcccattctcctctgacctctagcatcaacaaggcattttggcccacaggactgccgcatactggatgtttttcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggcccgtctagcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattgaGTTTGGAGTttaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124906 lncRNA downstream 200717 18144276 ~ 18144517 (-) True G99997
TU124847 lncRNA downstream 387747 17952758 ~ 17957487 (-) True G99944
TU124844 lncRNA downstream 387747 17955007 ~ 17957487 (-) False G99944
TU124840 lncRNA downstream 411906 17933000 ~ 17933328 (-) True G99942
TU124839 lncRNA downstream 439778 17905037 ~ 17905456 (-) True G99941
TU124955 lncRNA upstream 117430 18516451 ~ 18516729 (-) True G100038
TU124956 lncRNA upstream 161694 18560715 ~ 18560947 (-) True G100039
TU124957 lncRNA upstream 192431 18591452 ~ 18598196 (-) True G100040
TU125050 lncRNA upstream 337435 18736456 ~ 18737039 (-) True G100102
TU125060 lncRNA upstream 400549 18799570 ~ 18806676 (-) True G100109
AMCG00015720 mRNA downstream 223473 18102674 ~ 18121761 (-) True AMCG00015720
AMCG00015719 mRNA downstream 272516 18071300 ~ 18072718 (-) True AMCG00015719
AMCG00015718 mRNA downstream 289319 18047191 ~ 18055915 (-) True AMCG00015718
AMCG00015717 mRNA downstream 316264 17971120 ~ 18028970 (-) True AMCG00015717
AMCG00015713 mRNA downstream 797738 17523279 ~ 17547496 (-) True AMCG00015713
AMCG00015721 mRNA upstream 38162 18437183 ~ 18437479 (-) True AMCG00015721
AMCG00015722 mRNA upstream 38719 18437740 ~ 18439149 (-) True AMCG00015722
AMCG00015724 mRNA upstream 202211 18601232 ~ 18617687 (-) True AMCG00015724
AMCG00015723 mRNA upstream 228584 18627605 ~ 18630136 (-) True AMCG00015723
AMCG00015729 mRNA upstream 341039 18740060 ~ 18770335 (-) True AMCG00015729
TU124837 other downstream 507292 17837580 ~ 17837942 (-) True G99939
TU124562 other downstream 1809766 16529377 ~ 16535468 (-) True AMCG00015691
TU124478 other downstream 2123079 16221765 ~ 16222155 (-) True G99646
TU124430 other downstream 2242778 16017583 ~ 16102456 (-) True G99605
TU124288 other downstream 2641944 15701078 ~ 15703290 (-) True AMCG00015666
TU124970 other upstream 229322 18628343 ~ 18630665 (-) False AMCG00015723
TU125314 other upstream 1575935 19974956 ~ 19976069 (-) False AMCG00015752
TU125431 other upstream 1870808 20269829 ~ 20279644 (-) False AMCG00015761
TU126211 other upstream 6593932 24992953 ~ 25000890 (-) True G101067
TU126708 other upstream 9762816 28161837 ~ 28257732 (-) True G101456

Expression Profile