RNA id: TU126852


Basic Information

Item Value
RNA id TU126852
length 1391
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G101571
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 29208297 ~ 29269160 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NAACACactattagtatggtgttcctaataatcctttaggtgagtgtatGTCTCAGTAGAATAGAACATTAGAAGGATACCCTGTACATAGGGATTCCGGAATTcttgataaataaaacaccCATTACTTCcacaatatggaaacaaaaaggcATCACTCACTTATatcagattttttaaaatactcttcttacattaaaataattgatccAGAAGCACAGTGTCAGTAAAGAGcagtatttaacacatttacaaataagcattttgaaatcaaatattgatATTACTATTAACAACCAGTTGCCACCACCATTACTAGAAGAAATAAACCTAAAAAACTGCTTTCAAAACTATGTAGATTTTTCCAAGATACAGATTCCATGACTTTGCTCCCAATCATTCAATGGGAATGAGATCTAACACATTTGCTCCAAAACTTTTCTATGGCAACATCCACCAATATACCGCTAATTAAGTACAAGGTCAATCACACAGCACATATCACTCAGTACATAAGAGCATAtgaaagtgtccaattgagaggaggccattcaccccatcgtgctcgtttggtgtccattaataactaagtgatccaaggatcctatccagtctgtttttgaatgttcccaaattgtctcttcaaccacatcgctgggtagtttgttcagAATGTGATGCCTCTATGTCTGAAGAACAAGATGTTTAACATGGGCTTCTCTGATAAAATCACCTGTGCCCACCAGTACAACAATTCTGGAAATAAGTCACAAAGATTATGTCATCAATTCTAGACTGTAGCATCCCAATCTCTCCAACATTATGTTTACTAGGTGACCTCTCAGATACCAACATTCAATCACATAATACCGATCTCATTCTTGTTTGTCTATCTATTGCCAATAAATCCTCTTGAATTGGATACCTACAAAAAAACTCAACACCACACATTGGCTTGACAGAATACATCTCATTAGaaaaaatatctgtttaaaaaatgtcaaatttaaatgttCAGTAAGACACCTGCAATTGTATATCTGAATGTATTGCTTGATTAATGCCATATACCCAAACATAATCATATAGCATAACACattacaacaacacaaagcacactACACGACATAACGCACACAAAAGAACACAATgcacataaaataacaatgtacaTAAAAGTATACAAACACCGCCCCCCTGCCTCTTCAGGTTTTGAAATGTACTAcattgcccccccccacccatttcctgatatgttttgaaatgtatcataaagcatttttttttgtctgtcaaTGTTGCCATGTTTTATGAGTGAATGTTAcatgttgattgtttttatgtttgtatatgatacactaaaggaaattaatacaaataaatcagaaGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126692 lncRNA downstream 1160810 28041563 ~ 28047487 (-) False AMCG00015891
TU126655 lncRNA downstream 1210620 27987108 ~ 27997677 (-) False AMCG00015892
TU126622 lncRNA downstream 1538542 27669432 ~ 27669755 (-) True G101388
TU126594 lncRNA downstream 2438029 26768207 ~ 26770268 (-) True G101369
TU126539 lncRNA downstream 2633087 26574385 ~ 26575210 (-) True G101318
TU126970 lncRNA upstream 311689 29580849 ~ 29638632 (-) True G101660
TU127049 lncRNA upstream 706233 29975393 ~ 29975724 (-) True G101728
TU127171 lncRNA upstream 1066927 30336087 ~ 30339728 (-) False G101828
TU127172 lncRNA upstream 1066927 30336087 ~ 30339728 (-) True G101828
TU127183 lncRNA upstream 1124891 30394051 ~ 30396242 (-) True AMCG00015942
AMCG00015910 mRNA downstream 63386 29136419 ~ 29144911 (-) True AMCG00015910
AMCG00015909 mRNA downstream 80541 29119977 ~ 29127756 (-) True AMCG00015909
AMCG00015907 mRNA downstream 338053 28863860 ~ 28870244 (-) True AMCG00015907
AMCG00015906 mRNA downstream 431236 28756095 ~ 28777061 (-) True AMCG00015906
AMCG00015905 mRNA downstream 553026 28646331 ~ 28655271 (-) True AMCG00015905
AMCG00015920 mRNA upstream 325004 29594164 ~ 29619723 (-) True AMCG00015920
AMCG00015925 mRNA upstream 406397 29675557 ~ 29680079 (-) True AMCG00015925
AMCG00015924 mRNA upstream 411523 29680683 ~ 29696689 (-) True AMCG00015924
AMCG00015923 mRNA upstream 436815 29705975 ~ 29722947 (-) True AMCG00015923
AMCG00015926 mRNA upstream 496248 29765408 ~ 29769425 (-) True AMCG00015926
TU126809 other downstream 102137 29104229 ~ 29106160 (-) True G101540
TU126708 other downstream 950565 28161837 ~ 28257732 (-) True G101456
TU126211 other downstream 4207407 24992953 ~ 25000890 (-) True G101067
TU125431 other downstream 8928653 20269829 ~ 20279644 (-) False AMCG00015761
TU125314 other downstream 9232228 19974956 ~ 19976069 (-) False AMCG00015752
TU127089 other upstream 896866 30166026 ~ 30168248 (-) True AMCG00015936
TU127207 other upstream 1372034 30641194 ~ 30724429 (-) True G101853
TU127206 other upstream 1450661 30719821 ~ 30724429 (-) False G101853
TU127273 other upstream 1787607 31056767 ~ 31085062 (-) False AMCG00015950
TU127284 other upstream 1902747 31171907 ~ 31175745 (-) False AMCG00015955

Expression Profile