RNA id: AMCG00016586


Basic Information

Item Value
RNA id AMCG00016586
length 1535
RNA type mRNA
GC content 0.57
exon number 9
gene id AMCG00016586
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25553480 ~ 25559207 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGTTGTCGTCCATGGACAGCCTTGACGCCCTTCCTCGTCAGCCGCGGTACAGCTGTCCTCAGCAGGGCTGCGGGGCCGTGTTCACTCGGGAGTGGCGGCTCCGGGAGCATGGGACTGCGCACAGCGGCGAGCGGCCGCTGGTCTGCGACGCCCCGGACTGCGGCGCCCGCTTCTCCCGCAGCGCTCACCTGCGGCGCCACCGGCTGCGCCACTGCGGGCAGCGGGCCTTCAGGTGTACCCATGTCGGTTGCTCCCAGGCTTTTTTCACCCGGGACAACCTGACCCGACACGTCCGCTGCGTCCACGGGGCCGAGGACGGCTGCTTCAAGTGCCAATACCAAGGCTGTGACAAGAGCTTCAAGAAGCGCAGGACTTACAAGATGCACTTAAATGAGCACAGCCCGACCCTGTCTTtcagATGCCAGAAGGATGGATGTGGGATGAGGTTTGAAACCAGAGCAGCACGCAGAGCACATGAGAAGAGACATGGAGGGTATGCCTGCAAGGCCATTGGCTGCCAGATTGTCATGCCCACCTGGGGGAAGCTGCAGAAACACATGGTGAAACACCCAGCGGTGCACACCTGCCAGCAGTGCAAGAAGGAGTTCAAGAAGCTGGACTCCCTGCGGCGCCACAAGCGCTCCCATGCCCAGCAGAAGCCCGTGCTGCTCTGCCCCAGTGAGGGCTGCAAGGCCTACTTCACCACCACCTTCAACCTGCAGCACCATATCCGCAAGGTGCACCTCCAGCTCTTCAAATACCACTGCTACTACCCCGACTGCCCCAAAGTCTTTGCCATGCGGGAGAGTCTCACCCGGCACGTTGCTCATCATGATCTCGATGGGAATGTTAAGTTGAAGCACCGGCGGCCAAGCAAGAAGTGGCAGAAGCGCCTTGGGGGGAGCAGTGGCCACAAGGCTCCCCTGGTGGAGGACGACCTGCGGCGGCTCTTTGCCCTGCGCCTGCGCTTCCCCGGACGTGGCAAGGTGGAGGCTGACCTCTCGGGCCTCTTCAACGAGCGCAAGATCCCCCGCCGCGTGGAGACGGAGGTCAGCCTGAGAGAGCTGTTTGACCTGAAGCCAGCACGGCGGGTCAGCACTGCCTCCTAGAGCCTCACGGGCGGTGGGGAGGCTTTCTTTTGTAAATAGGATTCTAGAAATATAACGGTCTTCCTGGCCGCAAGACCGAGTGAAAGGGAATTGggtatagatttgttttttaatttactttttcaaacCGGGCTTGTGTGTAGACGGTGTCTCGCAACCCTGGGTCCAGCAGACTTAAATAAGTGATTTCAGTTGTatcgagggggggggggggggggggaattgtCTAGGTTTAATTGTTTTGGTAAGGGTGTCTTTAAGTTGCCTATACTACTGAACTGCCCTTCGCATGTACTTTTCTAGGTTCTTTTCAGATGACTTTGTGCTTTCCCCTAATCTACTTTATGGCATTTAAATTGAATAGTTGTGAATGGACTGTTGGAAAAACATGACCCAATAAAATCTCTAAAGCCAGTGGTAaa

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17932 lncRNA upstream 130454 25422443 ~ 25423026 (+) True G14455
TU17917 lncRNA upstream 187104 25363896 ~ 25366376 (+) True G14448
TU17914 lncRNA upstream 192672 25360471 ~ 25360808 (+) True G14445
TU17913 lncRNA upstream 194445 25357887 ~ 25359035 (+) True G14444
TU17836 lncRNA upstream 283285 25269838 ~ 25270195 (+) True G14383
TU18004 lncRNA downstream 45432 25604639 ~ 25611689 (+) True G14502
TU18012 lncRNA downstream 113052 25672259 ~ 25678349 (+) True G14510
TU18082 lncRNA downstream 374744 25933951 ~ 25935581 (+) True G14556
TU18169 lncRNA downstream 606423 26165630 ~ 26165982 (+) True G14623
TU18247 lncRNA downstream 654087 26213294 ~ 26215317 (+) True G14695
AMCG00016587 mRNA upstream 11435 25534049 ~ 25542045 (+) True AMCG00016587
AMCG00016588 mRNA upstream 33315 25515479 ~ 25520165 (+) True AMCG00016588
AMCG00016585 mRNA upstream 144574 25407227 ~ 25408906 (+) True AMCG00016585
AMCG00016584 mRNA upstream 148640 25385070 ~ 25404840 (+) True AMCG00016584
AMCG00016571 mRNA upstream 291024 25242014 ~ 25262456 (+) True AMCG00016571
AMCG00016598 mRNA downstream 166046 25725253 ~ 25758926 (+) True AMCG00016598
AMCG00016603 mRNA downstream 320139 25879346 ~ 25887229 (+) True AMCG00016603
AMCG00016606 mRNA downstream 346917 25906124 ~ 25918145 (+) True AMCG00016606
AMCG00016604 mRNA downstream 370370 25929577 ~ 25933057 (+) True AMCG00016604
AMCG00016607 mRNA downstream 388853 25948060 ~ 25948410 (+) False AMCG00016607
TU17920 other upstream 161640 25370296 ~ 25391840 (+) False AMCG00016584
TU17809 other upstream 396019 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other upstream 396019 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other upstream 396019 25150483 ~ 25157461 (+) True AMCG00016566
TU17806 other upstream 419601 25133198 ~ 25133879 (+) True G14361
TU18026 other downstream 166641 25725848 ~ 25740558 (+) False AMCG00016598
TU18062 other downstream 381321 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other downstream 381321 25940528 ~ 25950176 (+) False AMCG00016607
TU18257 other downstream 726656 26285863 ~ 26289222 (+) False AMCG00016625
TU18348 other downstream 868132 26427339 ~ 26432356 (+) True AMCG00016633

Expression Profile