RNA id: TU20574


Basic Information

Item Value
RNA id TU20574
length 742
RNA type TUCP
GC content 0.59
exon number 2
gene id G16563
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34106690 ~ 34107941 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTGCTCTCAGTCAGTGAGCTGTCAATCATTGTGTGACATCACAAGACCACAGCCACGCCCCGGCCACGCCTCTGCACCTGCCACTGATCTCATGTCACACATACACAGCTTTGTTTTGCTGTCCTTCCTTGTGTACTTGCTGTACTTTCCCACGTAATGTTGCGCTGTGTGCATGGGTGTTGTGTGTGCGTTGCTGATTCCTGCTCTGTTGGTGTCCGGTCAGATGAGACGCAGCTGGAGAGAGACCTGCACTGCGCACAGCTGGAAGAGCAGGTGGCCGAGCTGCAGGCGGAGACGCAGCGGCTGAGCAAGGCCTTGGTCCGGCAGGAGAGAACTCGGGGGAAGCTGGCCCAGGCCAAGAGGGAGAACCTGCTCCTGCAACAGCAGCTAGCCAAGGCCGAGAGCCAGGTCCTGGTCCAGGAGGAGGCCGCGAGAGCCGCGCAGGCCCAGctgaagagggagagaagagagagctTTGAGATGATGGAGGAGCTCATGGGCGAGAACATAGAGCTCCGGGAGCAGATCTCAAAGCTGGAGAGCAAGACGGCAGAGACAGAGGCTGCTGTGAGGGGGCTGCAGCAGGAGCTCAAAGACAAGGCCGTGAGCGTGGAGAACGTGGAGCTGCTGGAGATCATGGACGTGGACAGTGAGCATGTGGTGACGCAAGTGCAGTGTGATCTGGTCCAAACGCTGCAGAAACTGGCCCTGAGCGACGCAGCTCTTGAGGACAGCGCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20569 lncRNA downstream 5118 34101287 ~ 34101572 (-) True G16561
TU20568 lncRNA downstream 5484 34100921 ~ 34101206 (-) True G16560
TU20564 lncRNA downstream 6467 34096312 ~ 34100223 (-) True G16556
TU20562 lncRNA downstream 111430 33993190 ~ 33995260 (-) True G16554
TU20537 lncRNA downstream 300268 33771708 ~ 33806422 (-) True G16533
TU20581 lncRNA upstream 83531 34191472 ~ 34194310 (-) True G16567
TU20624 lncRNA upstream 188318 34296259 ~ 34300803 (-) True G16605
TU20660 lncRNA upstream 364395 34472336 ~ 34473547 (-) True G16635
TU20680 lncRNA upstream 450638 34558579 ~ 34561068 (-) True G16650
TU20683 lncRNA upstream 489257 34597198 ~ 34599931 (-) True G16653
AMCG00016908 mRNA downstream 97890 34000597 ~ 34008800 (-) True AMCG00016908
AMCG00016907 mRNA downstream 226012 33877103 ~ 33880678 (-) True AMCG00016907
AMCG00016904 mRNA downstream 510448 33582724 ~ 33596242 (-) True AMCG00016904
AMCG00016892 mRNA downstream 531394 33554101 ~ 33575296 (-) True AMCG00016892
AMCG00016895 mRNA downstream 586616 33513627 ~ 33520074 (-) True AMCG00016895
AMCG00016911 mRNA upstream 106958 34214899 ~ 34263010 (-) True AMCG00016911
AMCG00016931 mRNA upstream 983512 35091453 ~ 35096502 (-) True AMCG00016931
AMCG00016936 mRNA upstream 1127651 35235592 ~ 35245651 (-) True AMCG00016936
AMCG00016937 mRNA upstream 1165982 35273923 ~ 35312713 (-) True AMCG00016937
AMCG00016938 mRNA upstream 1288051 35395992 ~ 35399030 (-) True AMCG00016938
TU20442 other downstream 593111 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 675605 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 927807 33176076 ~ 33178883 (-) True G16356
TU20188 other downstream 1603438 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other downstream 1607795 32497507 ~ 32498895 (-) False AMCG00016859
TU21119 other upstream 3650216 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 3919542 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 3946724 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 7108710 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 8700770 42808711 ~ 42864616 (-) True G17842

Expression Profile