RNA id: TU113098


Basic Information

Item Value
RNA id TU113098
length 455
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G90709
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 6401734 ~ 6402188 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAGGTATGTTTACACCCAAAGGACACTACCTCTGTCTGACCTGGGTTGAAATCCAGTCCATACTGAATTGAATAAAACCGTTTAAAGACCATTGAGAACCTCACAGAAACTGAGCTATAGTGCTCCTGGCCAAGTTCAACATTCACAAGGTCCACAATGCAGACCTGTATTGCTTTCAACAATTATTTACATCTGGCCTATTGAGCAGAACATTTGTGAGAGACCACTGATTCTGTGCATGCCATGCTTATCTTTTCCCTCATCAGCACTCTGAGCTTGAGAAAGCTGGAAGCGTAGCCTGTGAGGAGTGACAATGAAAATCTGTGTAACGGAGGTCTGAGGGTCTGGCTGAGGAAAGTCAAATGCTGAAAAGACATGTTCTTGTTGTGATATGCTGAAGATAACTGAGACTAAATGAGAAAGTGTTATACACAGGGGTTCAACGAAATCACTG

Function

GO:

id name namespace
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113092 lncRNA upstream 118293 6283157 ~ 6283441 (+) True G90703
TU113077 lncRNA upstream 423366 5978164 ~ 5978368 (+) True G90691
TU113030 lncRNA upstream 724490 5676901 ~ 5677244 (+) True G90647
TU112908 lncRNA upstream 938670 5440212 ~ 5463064 (+) False G90561
TU112907 lncRNA upstream 938670 5461267 ~ 5463064 (+) True G90561
TU113180 lncRNA downstream 325844 6728032 ~ 6763072 (+) True G90731
TU113186 lncRNA downstream 472779 6874967 ~ 6892610 (+) True G90737
TU113187 lncRNA downstream 481466 6883654 ~ 6883957 (+) True G90738
TU113178 lncRNA downstream 542284 6944472 ~ 6990143 (+) False AMCG00017486
TU113182 lncRNA downstream 572473 6974661 ~ 7011061 (+) True G90733
AMCG00017478 mRNA upstream 1329 6382359 ~ 6400405 (+) True AMCG00017478
AMCG00017479 mRNA upstream 31082 6361359 ~ 6370652 (+) True AMCG00017479
AMCG00017477 mRNA upstream 83847 6312782 ~ 6317887 (+) True AMCG00017477
AMCG00017480 mRNA upstream 449942 5950836 ~ 5951792 (+) True AMCG00017480
AMCG00017475 mRNA upstream 584736 5808828 ~ 5816998 (+) True AMCG00017475
AMCG00017484 mRNA downstream 442371 6844559 ~ 6844962 (+) True AMCG00017484
AMCG00017483 mRNA downstream 442787 6844975 ~ 6846106 (+) True AMCG00017483
AMCG00017486 mRNA downstream 778758 7180946 ~ 7188612 (+) False AMCG00017486
AMCG00017488 mRNA downstream 838255 7240443 ~ 7279492 (+) True AMCG00017488
AMCG00017491 mRNA downstream 1056876 7459064 ~ 7475022 (+) True AMCG00017491
TU112690 other upstream 1733904 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 3706281 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 3706281 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 6189798 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 6303351 93120 ~ 98383 (+) True AMCG00017386
TU113125 other downstream 327550 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 327550 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 327550 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 327550 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other downstream 402556 6804744 ~ 7184790 (+) False AMCG00017486

Expression Profile