RNA id: TU113180


Basic Information

Item Value
RNA id TU113180
length 326
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G90731
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 6728032 ~ 6763072 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAACACCCAGCTACTACTGGGGTAGTGTGCACTCTGACAGTAGTAATCTCCTGCATCTTCAGGCTGGACTCCACTGATGGTCAGAGTGAAGTCAGTCCCAGATCCACTGCCACTGAATCGCTCTGGGATCCCAGACTGACGTTTGCTTGCACGATAGATCAGGAGTTTAGGAGCTTGTTCAGACTTCTGTTGGTACCAGTTTAGGCACTCACCATTAGAATCAGtgtacactgcactgctggTTTTACAGTTTACGGTGACTGTCTGTCCTTGTGGAGCAGATATCACTGATGAGGGCTGAGTCACAGTAATCTGTCCCCTGCATT

Function

GO:

id name namespace
GO:0002376 immune system process biological_process
GO:0045321 leukocyte activation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113098 lncRNA upstream 325844 6401734 ~ 6402188 (+) True G90709
TU113092 lncRNA upstream 444591 6283157 ~ 6283441 (+) True G90703
TU113077 lncRNA upstream 749664 5978164 ~ 5978368 (+) True G90691
TU113030 lncRNA upstream 1050788 5676901 ~ 5677244 (+) True G90647
TU112908 lncRNA upstream 1264968 5440212 ~ 5463064 (+) False G90561
TU113186 lncRNA downstream 111895 6874967 ~ 6892610 (+) True G90737
TU113187 lncRNA downstream 120582 6883654 ~ 6883957 (+) True G90738
TU113178 lncRNA downstream 181400 6944472 ~ 6990143 (+) False AMCG00017486
TU113182 lncRNA downstream 211589 6974661 ~ 7011061 (+) True G90733
TU113150 lncRNA downstream 247651 7010723 ~ 7188643 (+) False AMCG00017486
AMCG00017478 mRNA upstream 327627 6382359 ~ 6400405 (+) True AMCG00017478
AMCG00017479 mRNA upstream 357380 6361359 ~ 6370652 (+) True AMCG00017479
AMCG00017477 mRNA upstream 410145 6312782 ~ 6317887 (+) True AMCG00017477
AMCG00017480 mRNA upstream 776240 5950836 ~ 5951792 (+) True AMCG00017480
AMCG00017475 mRNA upstream 911034 5808828 ~ 5816998 (+) True AMCG00017475
AMCG00017484 mRNA downstream 81487 6844559 ~ 6844962 (+) True AMCG00017484
AMCG00017483 mRNA downstream 81903 6844975 ~ 6846106 (+) True AMCG00017483
AMCG00017486 mRNA downstream 417874 7180946 ~ 7188612 (+) False AMCG00017486
AMCG00017488 mRNA downstream 477371 7240443 ~ 7279492 (+) True AMCG00017488
AMCG00017491 mRNA downstream 695992 7459064 ~ 7475022 (+) True AMCG00017491
TU112690 other upstream 2060202 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 4032579 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 4032579 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 6516096 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 6629649 93120 ~ 98383 (+) True AMCG00017386
TU113139 other downstream 41672 6804744 ~ 7184790 (+) False AMCG00017486
TU113164 other downstream 41672 6804744 ~ 7184790 (+) False AMCG00017486
TU113173 other downstream 41672 6804744 ~ 7184790 (+) False AMCG00017486
TU113128 other downstream 256146 7019218 ~ 7184790 (+) False AMCG00017486
TU113137 other downstream 256146 7019218 ~ 7184790 (+) False AMCG00017486

Expression Profile