RNA id: TU142977


Basic Information

Item Value
RNA id TU142977
length 319
lncRNA type inter_gene
GC content 0.49
exon number 4
gene id G114179
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 902320 ~ 903843 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAGGTTAAGTCATGTGTGGTTTAAATAGCAAATAAGAGCAACAGCCACCTGTTCCTTGCCCTTGGCTTTCTTCAGAAACTCCTCCACCGCATCCACGGCCTGCTGGAAGCGCTTGCCCTTGTTGATCTTTATCATCTCCTCCTTGTGGGGATGGTATGGTTTCAGCTGCTCCACCTTTATCCAAGCGTGATCTTCAGTGCCAAAGAACTTCACAAAGAAGCATTTTTTGCCTCTTGGCTTCTTCAGATCCTTCGGAGGACTTAcgatCTTCCCTGGCCAAGGTGGATATCGTCCCAACTTCCCCcaAACCAAATCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142957 lncRNA downstream 13232 879311 ~ 889088 (-) True G114166
TU142932 lncRNA downstream 101849 796993 ~ 800471 (-) False AMCG00018074
TU142784 lncRNA downstream 402802 498327 ~ 499518 (-) True G114044
TU142769 lncRNA downstream 430196 468917 ~ 472124 (-) True G114030
TU142981 lncRNA upstream 9388 913231 ~ 913641 (-) True G114183
TU143020 lncRNA upstream 259047 1162890 ~ 1166493 (-) True G114213
TU143085 lncRNA upstream 364450 1268293 ~ 1268816 (-) True G114264
TU143095 lncRNA upstream 609150 1512993 ~ 1513642 (-) True G114273
TU143110 lncRNA upstream 629613 1533456 ~ 1534985 (-) True G114286
AMCG00018078 mRNA downstream 652 890097 ~ 901668 (-) True AMCG00018078
AMCG00018073 mRNA downstream 61398 802720 ~ 840922 (-) True AMCG00018073
AMCG00018074 mRNA downstream 101948 777387 ~ 800372 (-) True AMCG00018074
AMCG00018066 mRNA downstream 234409 662249 ~ 667911 (-) True AMCG00018066
AMCG00018064 mRNA downstream 243812 651287 ~ 658508 (-) True AMCG00018064
AMCG00018080 mRNA upstream 11997 915840 ~ 919384 (-) True AMCG00018080
AMCG00018077 mRNA upstream 18435 922278 ~ 926704 (-) True AMCG00018077
AMCG00018079 mRNA upstream 67923 971766 ~ 978842 (-) True AMCG00018079
AMCG00018082 mRNA upstream 97833 1001676 ~ 1012365 (-) True AMCG00018082
AMCG00018083 mRNA upstream 263822 1167665 ~ 1184993 (-) True AMCG00018083
TU142760 other downstream 459896 441085 ~ 442424 (-) True G114021
TU142989 other upstream 19664 923507 ~ 926739 (-) False AMCG00018077
TU142990 other upstream 19664 923507 ~ 926739 (-) False AMCG00018077
TU143224 other upstream 1081306 1985149 ~ 2006636 (-) False AMCG00018113
TU143230 other upstream 1103063 2006906 ~ 2067584 (-) False AMCG00018111
TU143313 other upstream 1377857 2281700 ~ 2288862 (-) True G114430

Expression Profile