RNA id: AMCG00019368


Basic Information

Item Value
RNA id AMCG00019368
length 1414
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00019368
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17075670 ~ 17078562 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttttaatgtaattacttAAACAGTAATTCCACACACAACAACTCAAAGCAGGCTTATCTGTTATTCTCTAACAGTTTATTTACATGTCTGCCGTATACTTACAGTGCGTCACTGTCGCACTACATGACGTCAGCCCTGTATTCTTTTCAGTGCCGTAAAGCAGTATTTCAGATTGTATCACGTGGGTATTTCAATTCTGCCCTTGGACttttgtaaagatgtctgtccCAAAGAAACCCGGCGAGAAAGCATTGAATCTTCTTCGAAATTTACCTCGGATCTCCTTAGTGAACCTCAGACCGAATCCGGGAGCAAAGAAGCTAGATAAGAGGCGTGGCAGGGGCGCCCATGGTGGGAACAGAAGTGGTCGGGGTCACaaaggagagaggcagaggggcAATCGTCCTCGTCTGGGGTTTGAGGGCGGTCAGGTGCCCTTTTACCTGGCTATCCCCAAGTATGGATACAACGAGGGCCACAGTCGTAGGCCTCAGTATCAGCCCTTAAGCCTCAACAGACTTCAGTACCTGATCGATCTGGGCCGGGTGGACCCCAGCCAGCCCATTGACCTCACTCAGTTAGTAAATGCCAGAGGAGTGACAgGTGCTGATATATTTGCAGCTAAAGTGAATATTGAAGTTCAGATGGCTTCAGAGGCTGCTATAGCTGCCGTAGAGAAGAACGGTGGTGTTATTACAACAAGTTTCTATGATCCAAGAAGTTTAACTGTCCTCTGTAAACCGGTTCCATTCTTCATGACTGGGCAGCCCATCCCAAAGCGTATGTTTCCAGGAGAGGTCCTGGTTCCCTATTACAGAGACGCCTCAAACCGGGGATACCTGGCAGATCCCGGCCAGATTCAGAAAGCTAGACTTGAACTTGCCAGGAAGTACGGTTATGTTTTACCTGACATTACCAAAGATGAGCTCTTCCAGATGCTCAGTATGCGGAAGGACCCTCGACAGATATTTTTTGGCCTAGCGCCTGGCTGGGTGGTCAATATGGCAGAAAAGAAGATTCTGAAGCCCACTGATGAAAGATTGCTCAGTTATTAtaattcatgaaaaaaaaaaagttttttgtcTTAtgatacaatgtaaaatataaaatgaaattaaaccttTCAAAGCACTGTACACAAAGCTCGATGGTCCGTTCCGTTTTCCTTACACCTTTACTCTTTGTAGGTGGGGAGTATATGATATCAAGCTCTACAGTGTGATGTGTTGTTGTGCAGACTGCTCTGATTGCAAAATGGGACAAACTGattcttattattttcatataaactCTTACATTGTTACAACAGGATTTTAGAAAGGCAAACGTAGTAAATATCGTGTTAGTTGTTTACAGAAATCACTTTTCTTATCATTAATagttatattaaaatgccttttctgTTGATAAATA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015934 large ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02876 RP-L15, MRPL15, rplO; large subunit ribosomal protein L15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41992 lncRNA upstream 17450 17057586 ~ 17058220 (+) True G33521
TU41941 lncRNA upstream 274743 16798149 ~ 16800927 (+) True G33474
TU41910 lncRNA upstream 571594 16496841 ~ 16504076 (+) True G33448
TU41906 lncRNA upstream 584617 16488871 ~ 16491053 (+) True G33444
TU41880 lncRNA upstream 709328 16366114 ~ 16366342 (+) True G33422
TU42066 lncRNA downstream 237111 17315673 ~ 17320035 (+) True G33585
TU42100 lncRNA downstream 344062 17422624 ~ 17424898 (+) False G33615
TU42102 lncRNA downstream 344062 17422624 ~ 17424898 (+) True G33615
TU42111 lncRNA downstream 344062 17422624 ~ 17424898 (+) False G33615
TU42132 lncRNA downstream 352391 17430953 ~ 17432628 (+) True G33634
AMCG00019361 mRNA upstream 25495 17044096 ~ 17050175 (+) True AMCG00019361
AMCG00019365 mRNA upstream 219388 16493467 ~ 16856282 (+) True AMCG00019365
AMCG00019354 mRNA upstream 809571 16240382 ~ 16266099 (+) True AMCG00019354
AMCG00019353 mRNA upstream 945230 15929875 ~ 16130440 (+) True AMCG00019353
AMCG00019350 mRNA upstream 1370590 15693042 ~ 15705080 (+) True AMCG00019350
AMCG00019367 mRNA downstream 11507 17090069 ~ 17091118 (+) True AMCG00019367
AMCG00019369 mRNA downstream 40786 17119348 ~ 17120947 (+) True AMCG00019369
AMCG00019370 mRNA downstream 76308 17154870 ~ 17214411 (+) True AMCG00019370
AMCG00019374 mRNA downstream 137092 17215654 ~ 17216544 (+) True AMCG00019374
AMCG00019373 mRNA downstream 220144 17298706 ~ 17303866 (+) True AMCG00019373
TU41862 other upstream 993727 16043942 ~ 16081943 (+) True G33406
TU41707 other upstream 1905829 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 2588964 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 6666173 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 7447008 9369898 ~ 9628662 (+) True G32293
TU42780 other downstream 3528912 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 3528912 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 3528912 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 5537061 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 6593563 23672125 ~ 23695801 (+) True G34511

Expression Profile