RNA id: AMCG00019375


Basic Information

Item Value
RNA id AMCG00019375
length 3953
RNA type mRNA
GC content 0.40
exon number 14
gene id AMCG00019375
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17385850 ~ 17415697 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCCTCATTCTGCGGGCTGGATGTCACAGCCGACGACGAAACTGCGCTGGACCTCTTCAGTTTGCTAGGGAAATCAATGAATACACGCCAGGAAAGTTAATTCACTGCGACGATTTGGATGTCCTAACAATTCAAGTTATACCAGAAATAAAATATGGGATGTAAAAAATCCAAACTGACAGATGGGCAGAATGGAGGTGCGCTTGATGTGAAGAAACCCCAACCAGTACGTACTGACCGAACTATATATGTGAGAGATCCAACGTCCAATAAACATCATGCTATAAATTCGTCAGCTCCAGATAGTCGCCTCCTGCCAGGGCAAGTGTTCCAAAAGCTGGAAGAACAACAGGATACTGGGAAGATTGTGGTTGCATTGTACCCATATGAAGCTATACATGCAGATGATCTGGGATTCAAGAAAGGAGAAAAGCTTAAAGTTCTTGAGGAgcaTGGTGAGTGGTGGAAAGCAAAGTCTCTAACAACCAGGAAGGAAGGATTTATTCCCTCTAACTATGTTGCACAAGTCAACACAATGGAAACAGAGGAATGGTTCTTCAAAGATATTACACGGAAAGATGCAGAAAGACAACTTCTAGCACCGGCGAATAAAGTAGGATCTTTCCTCATTCGAGAGAGTGAGACTTCGAAAGGCAGTTACTCCCTATCAGTCAGAGATGTCGATGCTCAGGGCGCCGATGCTGTTAAGCATTACAAGATACGGTCACTGGACAATGGCGGTTATTACATCTCTCCCAAAATTACTTTCAATGACATCACTATAATGATAAAGCATTACCAGAaaCAAGCAGACGGTCTCTGTAGAAAGTTAGATAAACCATGTGCGAAACCCAAAGCACAGAAGCCATGGGACAAAGATGCTTGGGAGATCTCCAAAGAGTCTATCAAGATGGTGAAGAAACTGGGAGCAGGGCAGTTTGGGGAAGTCTGGATGGGTAGCTTATTAGACTTCTTGAAAAGTGAAGCTGGTAATAAAGTACAGTTACCAAAACTTATAGATTTTTCTGCTCAGATTTCAGAAGGGATGgcatacattgaaaaaaagaACTATATCCATCGAGATCTGAGAGCTGCAAATGTGCTTGTTTCTGAAAGCCTGATGTGCAAGATAGCTGATTTTGGCTTAGCCAGAGTAATTGAGGATGACCAGTACACAGCCAGAGAAGgtgcCAAGTTCCCAATCAAGTGGACCGCACCTGAGGCCATTAACTATGGATCATTCACTATCAAATCAGACATGTGGTCCTTTGGAATCCTCCTGTATGAAATCATTACATATGGAAAAATTCCCTATCCAGGAATGAGCAACAGTGATGTCATGGCTTCAGTCCAGCGTGGTTATCGGATGCCAAGTCCCGAAAACTGTCCAAAAGAACTCTATGAGATCATGTCTTCCTGCTGGAAGAACAAACCAGAAGACAGGCCAACCTTTGACTACATGCAGAGTGTGCTGGATGACTTCTACACTGCGACTGAAGGGCAGTATCAACAGCAGCCTTAGGAGGAGTCTGCTTCACTGTACTGTGCCTTTTCTGATATATTATATTGGTTTGGCTACTGTGATGGAGAATTTTAGCAAAACGTCTGATTTAAAGTGACAGTCTTACCAAGTCAACCAGCTGCTTATTTTaagcaatacttttttttcttcaggagaCTATTTTCCTACTTCAAATTGAAGTTCCAAGGTAACCTAAAAAGTActtccacttttttttctctgtaattaCATGACTGGCAAGACAAAAGTAGTGGCCCTCCACTGTGTTTCAAGGAAATAGTGCTTCCCTACAACAGACTTAAAAACCAGAACAGGGAATAATCAACTGATTGTGATACAAGGATTGCAAAATATGCCTACCgactaaagaaaaaaagttactaAATGAagtaaagcacatttttattcatacaaATCAAGATGATGACAAAGGGTGGAGTTCTGCAACCATGGGTGAAAGTCTGTTTGGCAGGGTTTTATGCAAAATCCAACAGCCAGTATGGAGGGAGGGatatagaaaatgtgtaaacatcaactaattaagcaattaatggGTCCAGTGAAGTCCTTCATAAAAACCTCAAGACCCTGAGCTTAAGTTGCTGGCCTCTGCTGTAGCATGCCTAACAAGTAATCAAACGGCAGGCTTTTGTTATGAGATTATTTGtacaattgaaatgtatatccTATCTGTCAGTCTTGTTAGCTTTAAACAAGATACTATAGGTGTTGACACAACTCAGGCCTGTGCTTCGATTGTTCATTAACATACAAAGGCAATGGGTAGTAAAAACCAATAATGCCAAGTTCTGCCAAATGCTTTCTTCTAGGCCCAAGTACTCATAGgtctgatttttgtttataggttttttgttttataaatcataaaatTCAAAGCACTGGCAAGTTTCTCTCTGATGAAACGGTTAGTTTGCCTTTTTCATCCAGTGCCGAGGTGCTCTGGAAATGCATTCAAGACAAACACTGGATATATTACTTCTGCTAACACTGCTGTGAACAGAATTGCCTTACACTGCACACATGCACTTCTAACTACTACAGAGAGGCAGTTGTTTCATGTACTTGAGAAAGTCAACATAATCtgcagttattttatattttttgaacCATTGTACATTCCACATTTGtactaaaataaattgtacttACTTTTGTGTAGATTGgtcaagaaaaatatttaagtaGAATGATGCTGTATAATTAGTTTTGCAGAATATgattaaatgcaatacatattCACACTGGATGTAGGcctacatccatccatccatcctttaatagctttttaaaatcaGGAAAAGCAGTTTCCACAATGAAAAACTGGTGTGTGACCAACctcaacaattacaaaataaactagCAATACCTTAAATTTAGCTCAGTTATACATTTGCATAAGATAGTTTGTAAAGGAAAGCATATCAAAGTCTTAAAGGCGAACGCCACCAAAAATCCATCTTGTCTCAGGTTAGTCTATAAGTAGAAACtcattctgtggagtgagtttttcatttccagctcattctatgtaccagaaaccTTTCAATCTCTGACTtatggtacatagaatgagctggaaatgaaaaactcactccacagaatgaGTTTCTACTTATAGACTAACCTAAGACCAGATGGATTTTTGGTGGCGTTCGCCTTTAAGTGaacattgtattaattatatttgttttagctATAGCACCCTCTAATGTCCATTTCCAGCATACCATACTGTATGATCCTAATGTATACATGCAACGATACTAAACAAGAACAACCATTTCTAAAATACACTGTACGGTTGTGGCGATGAACCATTAATCATGAGATAATACAAAAACGGATTGCTTTTCTAAACCGGATCAAAGCAGTGCTCCTGGATTTCATGGAGGCCTCAAAGCATTTTGTGTACAGAATTTAACATGTAAAAgacaattttataatttaaatcaactttaatgtgtatatatattaaaaaaaaataaaagatttgtaCAACAATAAATGACAAATGGCAGTTTCATTTTACAAGGCCATCTTCTGGGTGGATCTGGGCGTGCTTTTGACAGACTTCTTCAAAGTCCGGCTGAGAGGCAGCTTTACAGGGGAACTAACGGAGGCCTTGATGTTGGCAAGCAGGCCTCTCTTGGGTCGAGGCTGCTCAGAGACTTCTTTTGAAAGCTGATTTAGCCGTTGAAGGTCTTCTCTAAGCTGCGACACCACAATCTCTAGCTCTGAATTGCTGCTCTGGAGTCTTTCAATTGCCTGGTCCTGTTGGAGAATTCGCTCTAGAAAGTCCTTGATTTCAGCTTCCTTTTCCCTAAAGCTCTCTCCGGCTTCCTGGAGGGTTTCATTCATTTCATCAATCTTTTTCTTCAAGGATTTGATGATCTCGTCTTTCTGTTCATG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K05854 LYN; tyrosine-protein kinase Lyn

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42066 lncRNA upstream 65815 17315673 ~ 17320035 (+) True G33585
TU41992 lncRNA upstream 327630 17057586 ~ 17058220 (+) True G33521
TU41941 lncRNA upstream 584923 16798149 ~ 16800927 (+) True G33474
TU41910 lncRNA upstream 881774 16496841 ~ 16504076 (+) True G33448
TU41906 lncRNA upstream 894797 16488871 ~ 16491053 (+) True G33444
TU42100 lncRNA downstream 6927 17422624 ~ 17424898 (+) False G33615
TU42102 lncRNA downstream 6927 17422624 ~ 17424898 (+) True G33615
TU42111 lncRNA downstream 6927 17422624 ~ 17424898 (+) False G33615
TU42132 lncRNA downstream 15256 17430953 ~ 17432628 (+) True G33634
TU42143 lncRNA downstream 33623 17449320 ~ 17452659 (+) False AMCG00019376
AMCG00019371 mRNA upstream 15268 17345622 ~ 17370582 (+) True AMCG00019371
AMCG00019373 mRNA upstream 81984 17298706 ~ 17303866 (+) True AMCG00019373
AMCG00019374 mRNA upstream 169306 17215654 ~ 17216544 (+) True AMCG00019374
AMCG00019370 mRNA upstream 171439 17154870 ~ 17214411 (+) True AMCG00019370
AMCG00019369 mRNA upstream 264903 17119348 ~ 17120947 (+) True AMCG00019369
AMCG00019376 mRNA downstream 33654 17449351 ~ 17452653 (+) True AMCG00019376
AMCG00019382 mRNA downstream 212695 17628392 ~ 17636437 (+) True AMCG00019382
AMCG00019388 mRNA downstream 291833 17707530 ~ 17708615 (+) True AMCG00019388
AMCG00019387 mRNA downstream 308726 17724423 ~ 17738652 (+) True AMCG00019387
AMCG00019385 mRNA downstream 344376 17760073 ~ 17764666 (+) True AMCG00019385
TU41862 other upstream 1303907 16043942 ~ 16081943 (+) True G33406
TU41707 other upstream 2216009 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 2899144 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 6976353 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 7757188 9369898 ~ 9628662 (+) True G32293
TU42780 other downstream 3191777 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 3191777 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 3191777 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 5199926 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 6256428 23672125 ~ 23695801 (+) True G34511

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000032_00861012_00868904.mRNA True 1488 mRNA 0.48 10 CI01000032 860929 ~ 868904 (+)