RNA id: AMCG00020184


Basic Information

Item Value
RNA id AMCG00020184
length 1215
RNA type mRNA
GC content 0.59
exon number 1
gene id AMCG00020184
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12618600 ~ 12619814 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGACTTGGACACATCAGAGAGTGCGATGGAGGAGGAGAGCCAGACGGAGACGGCTGCTCCCAGCATCTCCAACTTCTCCTCCAAGCTGCGCGCTATGGTCCGCATCCGGCGCAAGTACCAGGTGATGAAGAAACGAAGGGCGGAGCTGGGTGGGGAGCTGCCCCGGTCTGGACTGCTGCCACGGCCCACGGGTCCAGAGATCTTCACCTTTGACCAGCTGCCCGTTAGTGGTGGCAGCCCACGcaagagaaagaagaagaagaggaaccGAGTCATGTTCCCCAATGATGGTCGGCGGTACCTGCCCGCCAAGGAACGTAGCCGTGCAAAGAACTGCCTGTTCCTACTCAGCATCATTGTGTGCGTGCAGGTGTACAACGCCATCGAGAACCTGGATGATCACCTGCAAAGGTACGACCTGGAGGGGTTGGAGAAGACACTAAAGCGTGAGGTGTTCGGCCAGAGGGAGGCAGCAGAGAGCATCCTGGAGTTGCTGTCAGATTACCTCTCCACCTATGTCCACAACAAGCCACTCGTTATTTCCATCAACGGCCCGAGTGGTGTGGGTAAGAGCCATCTGGGCCGCATCCTGGCACGCCACTTCCGCTCGGTGGCTAGTGAGGAGCTGGTGCTGCAGTACTTCATGCTCCATCACTGCCCCCTGGAGGAGAATGCCCCGCACTGCGCCCAGGAGCTGGCCACCCGCATCTCAGACATGGTAAACCGGGCTGAGGCAGAGGAGAAGATCCCGGTGTTCATCTTTGATGAGGTGGAGTTCATGCACAGCCCGCTGCTGGAGTACCTGCAGGGCTTCTTCCGTGCCAACCAGACCAACGAGTACCTCAATGCTGTCTACGTGCTCATCAGCAACATCGGCCAGGCGGAGATCACCAAATTTGTCCTGCAGAACTCCTCCAGCAACGACTCTCTGGGCAAACAGAAGCTGACCCAGGAGCTGGGCAGGCAGGTGAAGCGCTCCCTGGTCCACTACCACCCTCTGTGGGCAGACACGGATGTGGTCCCCATGTGGCTGCTGGAAAAGAGCCATGTCATGGAGTGCTTCCTGGACGAGATGACGCGGGAGGGCTTCTACCCGGACACCTCCCACATTGAGCGCCTGGCCGCTGAGATTTCTTACTACACGGCAGGTAACCGGGAGTACTCCAGGAACGGCTGCAAGCAGGTGGTGGGAAAGGTCAATCTGCTATGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76944 lncRNA downstream 34852 12578671 ~ 12583748 (-) True G61488
TU76926 lncRNA downstream 119174 12493801 ~ 12499426 (-) True G61477
TU76910 lncRNA downstream 166807 12430802 ~ 12451793 (-) True G61470
TU76846 lncRNA downstream 223572 12394285 ~ 12395028 (-) True G61424
TU76759 lncRNA downstream 616509 12001700 ~ 12002091 (-) False AMCG00020159
TU77020 lncRNA upstream 99553 12719367 ~ 12743437 (-) True G61550
TU77034 lncRNA upstream 184856 12804670 ~ 12805433 (-) True G61558
TU77095 lncRNA upstream 387608 13007422 ~ 13007666 (-) True G61593
TU77227 lncRNA upstream 717202 13337016 ~ 13338101 (-) True G61696
TU77271 lncRNA upstream 827188 13447002 ~ 13450062 (-) True G61729
AMCG00020185 mRNA downstream 20366 12597659 ~ 12598234 (-) True AMCG00020185
AMCG00020178 mRNA downstream 55616 12550570 ~ 12562984 (-) True AMCG00020178
AMCG00020179 mRNA downstream 89007 12516806 ~ 12529593 (-) True AMCG00020179
AMCG00020180 mRNA downstream 108677 12484371 ~ 12509923 (-) True AMCG00020180
AMCG00020175 mRNA downstream 200372 12414984 ~ 12418228 (-) True AMCG00020175
AMCG00020186 mRNA upstream 21893 12641707 ~ 12646647 (-) True AMCG00020186
AMCG00020183 mRNA upstream 38499 12658313 ~ 12664512 (-) True AMCG00020183
AMCG00020188 mRNA upstream 134043 12753857 ~ 12759226 (-) True AMCG00020188
AMCG00020190 mRNA upstream 142595 12762409 ~ 12766384 (-) True AMCG00020190
AMCG00020189 mRNA upstream 146851 12766665 ~ 12776416 (-) True AMCG00020189
TU76920 other downstream 108663 12500424 ~ 12509937 (-) False AMCG00020180
TU76915 other downstream 113923 12490698 ~ 12504677 (-) False AMCG00020180
TU77089 other upstream 378024 12997838 ~ 12998223 (-) True G61589
TU77151 other upstream 601786 13221600 ~ 13224510 (-) True AMCG00020212
TU77373 other upstream 975704 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 1044273 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 1185206 13805020 ~ 13808333 (-) True AMCG00020252

Expression Profile