RNA id: AMCG00020671


Basic Information

Item Value
RNA id AMCG00020671
length 5656
RNA type mRNA
GC content 0.41
exon number 11
gene id AMCG00020671
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 28965045 ~ 28996330 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCAATGCGGTATATGAGTTCAAGAGAGGGATCCGAGCAAGCCTTTTTAAATGGGCGCAGAAATGGATGGAGCTAATCGGAACACAAGTAACTGCACTAAGCAGGCTCCCTCCCCGGCGCCGGAGAAGATGATGAAAAATGGCAACAACAAGCGCGACCACATCCCCGAAAGAGTGACACTGAAAAAAGAAATTGGACTTCTTAGCGCCTGTGCCATTATCATAGGTAATATCATCGGTTCTGGGATTTTCATCGCCCCTAAAGGagtactggagcattctggttCTGTTGGGCTAGCGCTCATCATATGGATGCTCGGAGGCGGAATAGCAGGACTGGGCTCCCTGTGCTATGCAGAGCTCGGAGTCACAATTCCCAAATCGGGGGGGGACTATTCTTACGTGACAGAAATTTTTGGAGGCCTAGTGGGGTTCCTGTTGCTGTGGAGTGCGGTGTTGATAATGTATCCCACCACCCTGGCAGTCATAGCGCTGACCTTCTCCAACTACGTCTTACAGCCTGTCTTCCCCGACTGTGTCCCTCCCTACACCGCCACGAGGACACTGTCAACTGTCTGCCTCTTGTTCCTGACCTGGGTGAACTGCTCAAGTGTGCGTTGGGCCACCAGGATCCAGGATGTGTTCACCATCGGCAAGCTATTGGCCTTGGGGCTCATCATTGTGGTGGGGCTGGTGCAGATCTGTAAAGGGCACTACGAAGCGTTGAGCCCTCAGGTTGCTTTTGAATTCTGGAAGACTCCTTCTGTAGGGCAGATAGCTCTGGCTTTCCTGCAGGCTTCCTTCGCCTTCAGCGGCTGGAACTTCTTAAATTACGTGACCGAGGAAGTTGTGGAGCCGCGGCGGAATCTTCCTCGTGCCATTTACATTTCCATTCCATTGGTGACCTTTGTGTACACATTTACCAACATAGCCTACTTCACCGCCATGTCACCCGAAGAGCTGTTAACATCCAATGCCGTGGCTGTCaccTTTGGGCAGAAGCTCCTGGGAATGTTCTCATCCATCATGCCTATCTCTGTGGCTCTGTCAACATTTGGAGGGATCAACGGCTATCTGTTCACATCATCCAGGTTATGCTTCTCGGGAGCCAGAGAGGGACACTTGCCCAGTTTGCTGGCCATGATCCACTTCAAAAACTGCACCCCCATCCCCGCTCTGCTGGTCTGCTGTGCCGCCACTATTGTCATCCTGTGCATcggagagacgcacacactcatCAACTACGTCTCCTTCATCAACTACCTCTCCTACGGGGTCACCATCGCTGGCCTGCTGTTCTTCCGCTGGAAAAAACCCAAACTGCACAGGCCCATCAAGgtgaaCCTGCTGGTACCAGTGCTTTATCTGATCTTCTGGGCATTTCTGCTGGTCTTCAGCTTCTACACTGAGCCAGTGGTGTGTGGGATTGGCCTCATTATCATCCTTACTGGGGTGCCAGTCTATTTCCTGGGAGTTCACTGGAAGAAAAAGCCAAAGTAGTCGGCCACGTATGTAGGACAGAAGCTGTGTTACGTCGTCTTCCCTCAGTTCGACGAGATGCCGCCGGAATGGACTGAGAAATCTGACGCATAAACTTCTTCTCCCCCCGCAgactttttccttttgtatttttatttggttttgtttagaCTCCTTTGAGAGGAAAAACGACAGCTACATTGTTTACAGTGGCAAACCTGGACTCTGTATGTTTGAAGTCCGATCTATTTGAGACCAGAGTTCGGTTCTGCACAACTAAGGGAggcttatttgttttgtaaacgAGCAAACTACAAAAACGTAATGGGCCTCAGGTACaattttttacttttctcttcTGGTAAGAAACCTATTGTCAACGGTACAACATTGTGACATTAACAGCTTTTTTCCCTTAAGGATTTTGACctatttaacagtttttttcttttgttgtggtccttttttatttaatataagtgtaaggggattttttttattgactcTAAAATGAATATCATATATTGCATTGTGCcttacagaaagaaagacaaaattagTGTTTATCTATTGacagtatattaaataatcCCCATGAATAACTCTACTTGGCACCACCTACCATCTCAGTGTCATTGTCTTCCAAATTTGTACTCAATTGTAGTAGGTAACAGCTTAGAGTAATGTCAGtgaatttcaaatgaatacCACAAGGCAGTGCTCTTCAAATCCAGTCAATGAAACACAATGCAGCAGGGTTTGTTAGGTTCCTTTAAGGGCCCTCTCAATCACTTCTTAAAAGGCCAGTCTCTTTTGATTTTCATTCCTATTGGAGATCTCTCTCTTACTTAAAGGACAAGACCACCAGTGATCTGAATCAGTTCCCATCACAAACAGACTTGAATTATAAACtatacacatcatatattttatatgattataaAGATTTATTCACAAACTCTAAGAGTTTATCATCAGTATAGTCTCCAGTATGGAGcagccatttaaaacaaaaaagtattcagtattcagtattaaaaaaaaaaggcacggCGTTCTGTTTCCTTGAATATACCTGTGGGACATTTTAACCAATCAGAAAATACTTTATCTGGAatagaccagtggttcccaaccctggaggaccccctatcctgctgtgttttattccaaccgggctctcaattacttaatagaacccttaattgatctaataatggactaaatcagagccttttaattattttaaacagtagggggtttaagttaagtatagaattgtataaataacttataatGAACCaacttttttattaaacattttattaaacacaaatcagattattacttaaattaagggaaCCACAGGAATAGACAACTCATTTTGATATAATGTGTCCCCGATATCCAAGAATGCCTCAATCTGACATTGCAGTTGCTTTTTTTCACTCTGTTTAACGTATTGTTCGAAACATGGGGATTGGTCTTAAATTACTAGTAGTAACTTAAATTTATAGTAGTGGAAACGTACAAGATATTTTTGCATGACAGTGGCTTGAAACAGTATCTTGATTCAGTGCTTATTAAAGAACTTGCAGCTTTGGGAGCactgtttaatttaagttaattagtCAAACCAATTAAGTAACTGGGACCTGGGCTGGAATGAAAGCCAACACACTTTTCAGCCCCATAGGAGTAACTTGTTTAGTGTCCTGCTTTAAAACATCACCTGCATTGTACCTAGAGGAGGGGTTAAATAGCTTCAGTTAAGCGCATAATTAGATTACTTGATTAATTAAGAGCTCTTTTGGAATGAAATCCAGGAGTACTCTGGCCGTCGAGGACCAGACTTGAAGAACACTGCTATAGGATTTACACCTAAATATCACAATCATTTCTGAGGCAGATCACGTGTACATAAAGATTTGAGTTACAGGTGGGGTGTAGCTCAGACCTGACCAATACTGGAACTCCCAGGAGATCTGCCATATTTTCTGTGGTATAGTTATATATCATTTGTGTTGAAAGCATTAAAGACAGATACTTCACTCTGACCGAGTCCTTGTTAGAGCTAAACATGGGAAGCACATCGCAGATGGAGTTTTTAAATACTCTGTCAGGTAGCAGCTAATTTAGTTCCTAACGCTGTTATCAGTTTTAATATCCTGAAACCCAGTTGCTTGGCCTTTTATTAGCACTTCTACatatctctgtctctcatgATGAGCAAAGTTTAGTGTGAACAATGTGTGattatgatgcatttaaataaaagcaaaacacgAGAACCTTACACATGGAAAATAGGAAATTCCCCACTTGAACGTACCACACTGCCAATATTTACAGTTTCTTTGACCAAAAGCAACTTCTGAAGCAGGAGAGTGTGATGTTTTAAACCTCTCTCTTTAGTCATGAGTTAGGGAAAAGAGTCTTGGTAAACCTTCTGTTAGCGTTTGTACTTAGATGTAACACAGGATTTCATACAGTTGTATAAACAATGGTTGAATAGGCGAGTAGCTGTGACACTGCGTAAGCAGCAGTTCTGCACAGCACTGTCTGGGGAGTTTATTCACATTCAGGAAGCAAGTTGAACTTCCCTCTGTGGTTTTAGTCTAAAAAGCGAGGAAGGTGGTGTCTGAAATAGTCAATATATCAAAACTATTAGGTAAACAATCCTGAGTTACAAAAGTGtgctaaatgtatttaacagttgttattttaaactgttgtttCCTTAAAGTGATGGAAACATAACTTCACTTTAAGATCACTTAATTATTCTATGTACAATGGAATGTGCAGTTGATAAAATGTTCAACAAAAGTCTGACCAACTTGCGTTTGTTTGCACGCTCAGTTGTTAACTGTCAACTGGCAAACCCACTCACAGGCCcattaaccatttaaaacaaaatctgttttaacCCTTTCTTCCCCACTTTCTGAAACGTGAACATGAGGCATTATTACAGATACCTGCTAGACTCCATGTCAAAATGTCTGCAATTTAGATATCTTTTGAATTCCCAGTTTTCCCAGTTCACATTTTCACTAATAATGCATCTTGAATATCTTGAATATACATCGACTAGAATTACTTTCTTGTGCATTATCTGCCCACAACccaaacttaaaaaacaacctaaaaaacacacaagtcaCACGAAATGAACATGAAAATTTGATTACCTTGCAACCTTTCAGTCCAAAACTGATGTCAGGGTGCTGCTCTGCTGAAGTGCAATTCCAAGGGTGAGTCTGTCTCCATCAGACGCCCTCACTGCCTGGGGATCGCCACAGCAGCTCACAGTTGTCGTACATACAGCTACAACTTTGTGTAGTAAGAATATTCAAATAGATCACATATGCCAAATGGAAATGGGGTGCAGAAAGGATGGCGTTCGTTTTCATGCTATAAATAGTGGACTAACTATATTAAGTTAGACATTAATAGCATCAAgaacattaacaacaaaaacacaggtaCTGTGTGAAGCACCAGGCAGTATTGGCCCGTTTGTAGCTTTAGTGCTGgtttttcatttacatgcaTGCAAGTTGGTTACACATCACTCCGTGTTTTAGGTGCATGGTGTACGGCTTCATTGTGGCATTTTCAGCAACTCTGCAGCATTGAGAAAgtatgaaagaaataaaaacacaccagaACCAAAATATATCAGTTTTAAAGCACTGTGATTCCTATTACACAGTGGAGAAATGTGCAAACACTTGAAACATTTCTAAAGAGGAACTGTAGACTTCAGTGAAACTCTTCCAATAGTCCAGATTCATCTTCTTCCATTGACGTCCGTGTCATTGGATTGttctgcacacattcacacacttcTGCATTGTGGCTTCCAACACCACACCCTTGACCTAATCTGTAACCTTACTTAGACCTATGCAGTTCtctttaattgtaatgtttttgaaagCCCAATGTATATTCTTGTGTTAATGAGATTCTACactgtaaattatttgtaaagGTGTATCACACTGGGTTACATTCTTGAGAATGTGTTGTTAACTTATGCaggattagtttattttatttttattttattttttatttttatggaggTGGgggtatttttctgttttgtttaaaaaaaagaaatttaacaaaaatatatagtggaataaatttaatattgaaagaaaaaa

Function

GO: NA

KEGG:

id description
K13782 SLC7A10, ASC1; solute carrier family 7 (D/L-type amino acid transporter), member 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81167 lncRNA upstream 26881 28937888 ~ 28938164 (+) True G64894
TU81084 lncRNA upstream 549768 28328980 ~ 28415277 (+) True G64823
TU81090 lncRNA upstream 622815 28339035 ~ 28342230 (+) True G64829
TU80926 lncRNA upstream 1720936 27243120 ~ 27244109 (+) True G64702
TU80816 lncRNA upstream 2529931 26433840 ~ 26435114 (+) True G64603
TU81193 lncRNA downstream 53163 29049493 ~ 29049815 (+) True G64916
TU81243 lncRNA downstream 263224 29259554 ~ 29339283 (+) True G64957
TU81332 lncRNA downstream 990235 29986565 ~ 29988128 (+) True G65024
TU81333 lncRNA downstream 990235 29986565 ~ 29988059 (+) False G65024
TU81357 lncRNA downstream 1536863 30533193 ~ 30536564 (+) True AMCG00020697
AMCG00020670 mRNA upstream 72945 28812297 ~ 28892100 (+) True AMCG00020670
AMCG00020667 mRNA upstream 168732 28788748 ~ 28796313 (+) True AMCG00020667
AMCG00020668 mRNA upstream 254059 28656515 ~ 28710986 (+) True AMCG00020668
AMCG00020665 mRNA upstream 541791 28399132 ~ 28423254 (+) True AMCG00020665
AMCG00020663 mRNA upstream 596678 28361746 ~ 28368367 (+) True AMCG00020663
AMCG00020673 mRNA downstream 24117 29020447 ~ 29021388 (+) True AMCG00020673
AMCG00020674 mRNA downstream 104307 29100637 ~ 29132579 (+) True AMCG00020674
AMCG00020679 mRNA downstream 306423 29302753 ~ 29319663 (+) True AMCG00020679
AMCG00020688 mRNA downstream 410192 29406522 ~ 29407238 (+) True AMCG00020688
AMCG00020683 mRNA downstream 478839 29475169 ~ 29481664 (+) True AMCG00020683
TU81160 other upstream 90973 28873630 ~ 28874072 (+) True G64887
TU80958 other upstream 1546525 27415996 ~ 27418520 (+) True G64730
TU80525 other upstream 3411725 25550911 ~ 25553320 (+) True G64372
TU80336 other upstream 3880291 25078142 ~ 25084754 (+) False AMCG00020573
TU80333 other upstream 3888355 25074057 ~ 25076690 (+) True AMCG00020572
TU81182 other downstream 12333 29008663 ~ 29009601 (+) True G64908
TU81272 other downstream 468234 29464564 ~ 29465712 (+) True G64979
TU81277 other downstream 529385 29525715 ~ 29575346 (+) False AMCG00020684
TU81412 other downstream 1770694 30767024 ~ 30770927 (+) True G65100
TU81504 other downstream 2166271 31162601 ~ 31217840 (+) True AMCG00020708

Expression Profile