RNA id: TU81160



Basic Information


Item Value
RNA id TU81160
length 443
RNA type TUCP
GC content 0.55
exon number 1
gene id G64887
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 28873630 ~ 28874072 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atctgagcgactttgacaagggccaaattgtgatggctagaagactgggtcagagcatctccaaaactgcagctcttgtggggtgttcccggtctgcagtggtcagtacctatcaaaagtgttccaaggaaggaaaagcagtgaactggcgacagggtcatgggcggccaaggctcatcgatgcacgtggggagcgaaggctggcccgtgtggtccgatccaacagacgagctactgtagctcaaattgctgaaaaagtgaatgctggtgctgatagaaaggtgtcagaacacacagcgcatcgcagtttgttgcgtatggggctgcgtagccgcagaccagtcagggtgcccatgctgacccctgtccactgccgaaagcacctacaatgggcacgtgagcatcagaactggaccacggagcaatggaagaaggtggcctgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU81084 lncRNA upstream 458353 28328980 ~ 28415277 (+) True G64823
TU81090 lncRNA upstream 531400 28339035 ~ 28342230 (+) True G64829
TU80926 lncRNA upstream 1629521 27243120 ~ 27244109 (+) True G64702
TU80816 lncRNA upstream 2438516 26433840 ~ 26435114 (+) True G64603
TU80814 lncRNA upstream 2441477 26431674 ~ 26432153 (+) True G64601
TU81167 lncRNA downstream 63816 28937888 ~ 28938164 (+) True G64894
TU81193 lncRNA downstream 175421 29049493 ~ 29049815 (+) True G64916
TU81243 lncRNA downstream 385482 29259554 ~ 29339283 (+) True G64957
TU81332 lncRNA downstream 1112493 29986565 ~ 29988128 (+) True G65024
TU81333 lncRNA downstream 1112493 29986565 ~ 29988059 (+) False G65024
AMCG00020667 mRNA upstream 77317 28788748 ~ 28796313 (+) True AMCG00020667
AMCG00020668 mRNA upstream 162644 28656515 ~ 28710986 (+) True AMCG00020668
AMCG00020665 mRNA upstream 450376 28399132 ~ 28423254 (+) True AMCG00020665
AMCG00020663 mRNA upstream 505263 28361746 ~ 28368367 (+) True AMCG00020663
AMCG00020660 mRNA upstream 556881 28294837 ~ 28316749 (+) True AMCG00020660
AMCG00020671 mRNA downstream 90973 28965045 ~ 28996330 (+) True AMCG00020671
AMCG00020673 mRNA downstream 146375 29020447 ~ 29021388 (+) True AMCG00020673
AMCG00020674 mRNA downstream 226565 29100637 ~ 29132579 (+) True AMCG00020674
AMCG00020679 mRNA downstream 428681 29302753 ~ 29319663 (+) True AMCG00020679
AMCG00020688 mRNA downstream 532450 29406522 ~ 29407238 (+) True AMCG00020688
TU80958 other upstream 1455110 27415996 ~ 27418520 (+) True G64730
TU80525 other upstream 3320310 25550911 ~ 25553320 (+) True G64372
TU80336 other upstream 3788876 25078142 ~ 25084754 (+) False AMCG00020573
TU80333 other upstream 3796940 25074057 ~ 25076690 (+) True AMCG00020572
TU80130 other upstream 4391516 24478835 ~ 24482114 (+) True G64046
TU81182 other downstream 134591 29008663 ~ 29009601 (+) True G64908
TU81272 other downstream 590492 29464564 ~ 29465712 (+) True G64979
TU81277 other downstream 651643 29525715 ~ 29575346 (+) False AMCG00020684
TU81412 other downstream 1892952 30767024 ~ 30770927 (+) True G65100
TU81504 other downstream 2288529 31162601 ~ 31217840 (+) True AMCG00020708

Expression Profile