RNA id: AMCG00020769


Basic Information

Item Value
RNA id AMCG00020769
length 1791
RNA type mRNA
GC content 0.66
exon number 3
gene id AMCG00020769
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32493369 ~ 32495441 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgTCCTCTCTGGAGTCATCCTGCCTGTCCCTCCACTGCTCAGGAGGTGTGACCGCCAACATCAGCCTGGCAGTGATTGGTGTGAGTAGGCATGGCATGAGTTTCCCACCAGGGGGAGGAgtcagcagcacagcagccgTCACAGCAGGTGCAGGGGGAGGAGTCAGTAGGACGGGGGGCGGGACTGGGGGTGCTGGAGGGGGCGAGGCCTCGGTGGGAGGAGCCTCTGTGTGCAACCAGAGCGGCGACGCCCTCTGGCTCTCGCAGGACGCAGAGCAGCCGTATTCCCCCCAGGCAACCGCCGCCTTCGCCACGGCCGTCTCCTTGATGGTCGTCTTCACCATCTTTGGCAACGCACTGGTGATTGCAGCCGTGCTGACCAGCCGAGCGCTCCGGGCCCCGCAGAACCTCTTCCTGGTGTCGCTGGCGGCGGCGGACATCCTGGTGGCCACCTTGATCATCCCTTTCTCCCTGGCCAACGAGCTCATGGGCTACTGGTACTTCCGGGCCGCCTGGTGTGAGATCTTCCTGGCTCTGGACGTCCTGTTCTGCACCTCCTCCATCGTCCACCTCTGTGCCATCAGCCTGGACCGGTACTGGTCAGTGTCGCGGGCCGTGAGCTACAGCGCCGCCCGCACGCCCCGCCGCATCAAGGCCGCCATCTTGGCTGTGTGGCTCGTGGCCGCTGTCATCTCCTTCCCGCCCCTGCTCTCCATGAACAAGAAGCAGGGAGGCGGCGGGGAAGGAGGAGAGGGCGGGTCGGAGCGGCCGCAGTGCCAGTTAAACGACGAGCGCTGGTACATCTTGTCCTCCTCCGTGGCCTCCTTCTTCGCCCCCTGCCTCATCATGATCCTCGTCTACCTGCGCATCTACCAGATCGCCAAGCAGCGCACCCGCCGCCCCACCCGCAGCAGCCAGAGGAGCAGGGAGGGGGCGGCAGGGGCAGGAGGAAAGGGGAACCCGGTTGCGGTCTCAGCCGGTGACGCTCCGGCCACTGCCCTCCATGCCAACGGACACCCCCCTGCCCCCGCCCCGCCACTACCACAGCCCCTGCCCCTCCCCGACCCCTCCGCCACCACTGCCGTCCCCCCCCCCATCCGCCTCCCTTCTGTCTCCACCTCTGGCTGCCTCAccccctcaccctctctctcctcgctctgcctctccctctcctcatcTCAGCGGCCTCAGGGCAGGAACAGCGGCAGTGCGGTGGGGGAAGAGGGAgacaagagagaaagagaggagagagagggggagggggagagaacagagagtgagggggagggagagagagggagagaaggagaggggcaccccagccccaccGCTGCTGTGGACACGGTGGGCGCGGCGGGAGAAGGGGCAGGGGAGGGAGCAGGGGATGAGGGCAGGTGCAGTACCCATAAGGACGGGGCTGGCGGAGCAGGGGGCGGGGGAGCGGTGCGGACGGATGTGCAGTGGAGGAGCAGGCGGGCAGGCGGGGCCGGGACCTCGGTCACCGTGCGGCGCGGCGCCACCCTGAACCGCGAGAAGCGCTTCACCTTCGTGCTGGCCGTGGTCATCGGGGTGTTCGTGCTCTGCTGGttccccttcttcttctcctACTCCCTGCAGGCCGTGTGCCCCTGTGCCTGCAGCCTCCCCGAGTCCCTCTTCAAGTTCTTCTTCTGGATCGGCTACTGCAACAGCTCCCTGAACCCCGTCATCTACACCGTCTTCAACAAGGACTTCCGCCAGGCCTTCAAGAAGATCCTGTGCAAGAGGGGCACCAAGGGCACCTTCTTCTAA

Function

GO: NA

KEGG:

id description
K04139 ADRA2B; adrenergic receptor alpha-2B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81961 lncRNA downstream 128227 32358238 ~ 32365142 (-) False G65549
TU81873 lncRNA downstream 277612 32212727 ~ 32215757 (-) True G65468
TU81870 lncRNA downstream 305658 32186482 ~ 32187711 (-) True G65465
TU81868 lncRNA downstream 370536 32121885 ~ 32122833 (-) True AMCG00020746
TU81780 lncRNA downstream 432072 32058318 ~ 32061297 (-) True G65397
TU81987 lncRNA upstream 19962 32515403 ~ 32515617 (-) True G65571
TU82054 lncRNA upstream 59419 32554860 ~ 32556557 (-) True AMCG00020767
TU82055 lncRNA upstream 62124 32557565 ~ 32558864 (-) False AMCG00020767
TU82209 lncRNA upstream 778735 33274176 ~ 33274444 (-) True G65753
TU82240 lncRNA upstream 1310260 33805701 ~ 33852626 (-) True G65776
AMCG00020765 mRNA downstream 31032 32455580 ~ 32462337 (-) True AMCG00020765
AMCG00020762 mRNA downstream 43493 32444254 ~ 32449876 (-) True AMCG00020762
AMCG00020760 mRNA downstream 49698 32439694 ~ 32443671 (-) True AMCG00020760
AMCG00020763 mRNA downstream 86844 32398435 ~ 32406525 (-) True AMCG00020763
AMCG00020761 mRNA downstream 96849 32385090 ~ 32396520 (-) True AMCG00020761
AMCG00020767 mRNA upstream 60245 32555686 ~ 32559096 (-) False AMCG00020767
AMCG00020768 mRNA upstream 68804 32564245 ~ 32580573 (-) True AMCG00020768
AMCG00020775 mRNA upstream 89452 32584893 ~ 32591227 (-) True AMCG00020775
AMCG00020777 mRNA upstream 98829 32594270 ~ 32598433 (-) True AMCG00020777
AMCG00020780 mRNA upstream 103536 32598977 ~ 32600643 (-) True AMCG00020780
TU81960 other downstream 128227 32361235 ~ 32365142 (-) True G65549
TU81423 other downstream 1684523 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 1962233 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 2960252 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 3087733 29381315 ~ 29405636 (-) True G65000
TU82051 other upstream 112421 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 159693 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 390923 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 873184 33368625 ~ 33369105 (-) True G65756
TU82397 other upstream 1726874 34222315 ~ 34239697 (-) False AMCG00020810

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00013957 True 2794 mRNA 0.48 1 NC_007125.7 790166 ~ 792959 (+)
grasscarp (Ctenopharyngodon idella) CI01000158_01103049_01104386.mRNA True 1679 mRNA 0.49 1 CI01000158 1102796 ~ 1104474 (-)
mexican tetra (Astyanax mexicanus) TU163131 True 1159 TUCP 0.49 1 NC_035910.1 10132784 ~ 10133942 (-)