RNA id: AMCG00020776


Basic Information

Item Value
RNA id AMCG00020776
length 1167
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00020776
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32611491 ~ 32613957 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCATTGTCCTCCTCCTGCCTGCAGGCGGCGCTGCAGCGCTCTGCACCGGGTCGCTCTATTTGAAGTCTGTGGTCTGTGCGGACGCGGAAGTGCTGCTGAGGCAGAGGCGCACGCTGTGAGCGAGAGACGCGGTGACCTTACCGAGTGAGACGCGCAGCCTCTGTCAGTCAGCCAGCCGGCAACCCGCAGCTGCAGCGCCCCGACACGCGTACCGGCCACCCCCCCGCTCGGCGCTTCTGTCCCGTGTGGCTCCCGCGGTGTGGACGGAGGTCAGGTCCGCTGCGCACTGTAACCCGGTGCGGGATGGCTGAGGCCCAGCAGGCGCGGGTCCAGTCCGCCGTGGATCAGATGGTTCAGGATCTGGAGAGAGACCACATCCGGAAGATGCAGGGCCGGATGTTCCAGTGCAGTGCGCAGTGCTGTGAGCGCTCCACCGACTCCATGGCACAGGTGCACCAGTGTATCGAGCGCTGCCACACCCCGCTGGCACAGGCACAGAGCCTGGTCACCTCTGAGCTCGAGAGATTCCAGaaccGGCTGGCCCGCTGCACTATGGGCTGTAATGACCAGGCGCGCGACGCTCTGGACGGGGGTACGAAGGAGCCGGCAGTGCGGGTGCAGCTGGAGCGCTGTGTGAGCAGCTGTGTGGACGAGCACATCAACCTGCTGCCCAGCCTCACGCGCAGGATGAGGGACAGCCTGGGGTCCATCCCACAGTGAGGCATGAGGGGACAGCCTGAGAGGAAAGCCAGAGAACAGTGTAGGGGCTGACAGATGGAGTAGACAATCGAGGATTGGAAACCGACAGAAGCAGCTCAGCCAGCAAGCATTAGTGAAGACGCataaaaaactgtgaaaacacacacacacacacacacacatgggtgGACAGATGCACAGATGCACAGACCTGGGATGATGCTGCCCCAGAGTCCCGGAGCTGCGTCCACAGTTCTCTGAATAAACCGAGTCACTGCCTCTGTTCTCGGAGGGGGGGCAGTGTCCCTCTGAGTGCTCTGCAGGTGACAACACAGTCACAGCCGTGTCTCTCTGTCCTGACTtcctgtttgttgtgttttgtattaaaacttGATGTTGAAATCAAAgccgtctgtgtgtgtttgtggatgaGAGTGTGTGTACGTTCATGCACAATGTGACAGTg

Function

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82055 lncRNA downstream 52627 32557565 ~ 32558864 (-) False AMCG00020767
TU82054 lncRNA downstream 54934 32554860 ~ 32556557 (-) True AMCG00020767
TU81987 lncRNA downstream 95874 32515403 ~ 32515617 (-) True G65571
TU81961 lncRNA downstream 246349 32358238 ~ 32365142 (-) False G65549
TU81873 lncRNA downstream 395734 32212727 ~ 32215757 (-) True G65468
TU82209 lncRNA upstream 660219 33274176 ~ 33274444 (-) True G65753
TU82240 lncRNA upstream 1191744 33805701 ~ 33852626 (-) True G65776
TU82248 lncRNA upstream 1217778 33831735 ~ 33835514 (-) True G65783
TU82241 lncRNA upstream 1224290 33838247 ~ 33852626 (-) False G65776
TU82287 lncRNA upstream 1347220 33961177 ~ 33962191 (-) True G65813
AMCG00020774 mRNA downstream 783 32608849 ~ 32610708 (-) False AMCG00020774
AMCG00020780 mRNA downstream 10848 32598977 ~ 32600643 (-) True AMCG00020780
AMCG00020777 mRNA downstream 13058 32594270 ~ 32598433 (-) True AMCG00020777
AMCG00020775 mRNA downstream 20264 32584893 ~ 32591227 (-) True AMCG00020775
AMCG00020768 mRNA downstream 30918 32564245 ~ 32580573 (-) True AMCG00020768
AMCG00020781 mRNA upstream 5817 32619774 ~ 32624594 (-) True AMCG00020781
AMCG00020779 mRNA upstream 16110 32630067 ~ 32640235 (-) True AMCG00020779
AMCG00020778 mRNA upstream 28967 32642924 ~ 32644550 (-) True AMCG00020778
AMCG00020773 mRNA upstream 54954 32668911 ~ 32674378 (-) True AMCG00020773
AMCG00020784 mRNA upstream 85242 32699199 ~ 32703449 (-) True AMCG00020784
TU82051 other downstream 796 32607862 ~ 32610695 (-) True AMCG00020774
TU81960 other downstream 246349 32361235 ~ 32365142 (-) True G65549
TU81423 other downstream 1802645 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 2080355 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 3078374 29529919 ~ 29533117 (-) False AMCG00020685
TU82083 other upstream 41177 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 272407 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 754668 33368625 ~ 33369105 (-) True G65756
TU82397 other upstream 1608358 34222315 ~ 34239697 (-) False AMCG00020810
TU82568 other upstream 2194817 34808774 ~ 34814169 (-) False AMCG00020836

Expression Profile