RNA id: AMCG00020835


Basic Information

Item Value
RNA id AMCG00020835
length 5454
RNA type mRNA
GC content 0.54
exon number 18
gene id AMCG00020835
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34850662 ~ 34865362 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGCTCAGCCGGTACGGAAGCAGCGTGGGGACAGCGATGCTCGTAGAGAGACGCATGTGACCGCTTTCACAGACACTGGCCGGGGATTCAGACGGAAGATCTACCACTTGGGTGCTAGGGTTGGAGACCGAGTTGACAAAAGGGAACACCTATTTATCGCctacatattgatttatttatctgtgtttgaAAGGGAAAAGAGGCTGTGACCATGATTGCATCGCATCTACTGGCATACTTTTTCACCGAGCTCAATCATGACCAGGTGCAGAAAGTGGACAAATACCTTTACCACCTGCGCCTCTCGGACGAGGTGCTGATGGACATCTCCCACCGCTTCCGCCGCGAGATGGACAAGGGCCTGGGCCGCGACACCAACCCCACCGCGACGGTCAAGATGCTGCCCACCTTCGTCCGCTCCACCCCCGACGGCACAGAGGAGGGTGACTTCCTGGCCCTGGATCTGGGCGGCACAAATTTCCGTGTGCTGCACGTTAAGGTGTCCGACAACGGCAAGCAAAAAGTGGAGATGAAGAACCAGATCTATTCCATCCCCGAGGACATCATGAGAGGCAGCGGCACGgcgCTGTTTGACCACATCGCGGAGTGTCTGGGAAATTTCCTGGAGAAGCTGGAAATGAAGGACAAGAAGCTGCCCCTGGGCTTCACCTTCTCCTTCCCCTGCCAGCAGAAGAAACTGGATGAGAGTATCCTGTTGACATGGACGAAAGGGTTCAAGTCCAGTGGAGTGGAGGGCAAAGATGTGGTCAGCCTGCTCAGGAAGGCCATCAGGAAGAGAGGGGACTTTGACATCGACGTTGTTGCGGTGGTGAACGACACTGTGGGAACCATGATGACCTGTGGGTACGACGACCATAACTGCGAGATTGGCCTGATCGTGGGCACTGGCACCAACGCGTGTTACATGGAGGAGATGCGGCACATGGACCTGGCGGAGGGGGACGAGGGGCGCATgtttgaGAAGATGATCAGTGGGATGTACATGGGGGAGCTTGTGCGTCTCATCCTGGTGCAGATGGCGAAGGAGGACCTGCTGTTCGGGGGCCAGATCACCGCTGACCTGCTGACCACCGGCCACTTCGAGACGAGCTTTGTCTCCACCATCGAGAAGGACAAGGAGGGCCTGGAGTACGCGCGGGAGGTGCTGTGCCGGCTGGGCCTGTCCCCGTCAGAGGAGGACTGTGTGGCGACGCAGCGCATCTGTCAGGTGGTGTCCACGCGTGCCGCCCACCTGTGCGCCGCCGCACTGGCCGCCGTGCTGAGGCAGATCCGTGACAACAAGGGCCTGGAGCGGCTGAGGACCTCGGTGGGGGTGGACGGCTCGGTCTACAAAAAACACCCACAGTTTGCGCGTCGGCTTCACAAGATGGTGCGCCGCCTGGTGCCGGACTGCGACGTGCGCTTTATGCGCTCTGAGGATGGCAGCGGCAAGGGGGCGGCCATGGTGACAGCGGTGGCGTACCGGCTGGCCAGTCAGCGGGCCCAAAGACAGGCCACGCTGGCTGGGCTACGGCTGGACCGGCCCGCCCTGCTGCAGGTCAAGCAGAGAATgctggaggagatggaggcGGGGCTTCACAAGGAGACGCACGACCAGGCGCCCGTCAAGATGCTGCCCACCTTCGTCCGCTCCACCCCCGACGGCACCGagagGGGGGATTTCCTGGCGCTGGACCTGGGCGGCACTAATTTCCGAGTGCTGCTGGTGCGCGTGCGGAACGGCAAGAAGCGCAGCGTGGAGATGCACAACAAGATCTACTCCATCCCCCGGGAGGCCATGCAGGGCACTGGAGAGGAGCTGTTTGACCACATTGTCCACTGCATCGCTGACTTCCTGGAGTATATGGGCATGAAGGGCGTGGCTCTGCCCATGGGCTTCACCTTCTCCTTCCCCTGCCAGCAGAACAGCCTGGATGAGGGGATCCTGCTGAAGTGGACGAAGGGGTTCAAGGCGACGGGCTGTGAAGGGGAGGATGTGGTCACCCTCTTGAAGGATGCCATTCACCGCCGGGAGGAGTTTGACCTGGATGTGGTTGCGGTGGTCAATGACACCGTGGGCACCATGATGACCTGTGGCTATGAGGACCCCCTGTGTGAAGTGGGGCTGATTGTGGGGACCGGCAGCAATGCGTGCTACATGGAGGAGATGAGGAACGTGGAGCTGGTCCCCGGCACAGAGGGCCGCATGTGCATCAACATGGAGTGGGGCGCCTACGGGGACAATGGCTGCCTGGATGACCTGCGCACACCCTTCGACACGGCCGTGGATGAGCTGTCACTCAACCCTGGAAAACAGAGGTTTGAGAAGATGATCAGTGGGATGTATCTGGGGGAGATCGTGCGCAACGTGCTGCTAGACTTCACAAAGCGCGGCCTGCTGTTCCGCGGGCGAGTGTCCGAGAGGTTGAAGACCCGCGGCATCTTCGAGACCAAGTTCCTGTCGCAGATCGAGAGTGACCGCCTGGCCCTGCGTCAGGTGCGCTCGATCCTGCAGCACCTGGGTCTAGACAGTACCTGCGACGACAGCATCATCGTGAAGGAGGTGTGCACTGTGGTGGCCCGGCGGGGGGCCCAGCTGTGCGGGGCGGGGCTGGCCGCCGTGGTGGACAAGATCCGCTGCAACCGCGGCCTGGAGCGGCTTCGGGTGACCGTGGGGGTGGACGGCACGCTGTACAAGCTGCACCCACATTTCTCCACCGTTCTGCACGAGACCGTCCGGGACCTGGCCCCGCAGTGCGACGTCTCCTTCGTCCAATCGGAGGACGGCAGCGGCAAGGGGGCGGCCCTGATCACCGCAGTGGCCTGTCGCATCAGGGAGGCGGGGCAGCACTGaggccctcctcctcctccccatccGCCAATCGGAGTACAGGACGGGGGCTGGGAggcagagagggacagagacggAGGCGAGGACCCAGGACTGTGGTGGAGCAGTAGCTTCCAGTCAACTTCCTTACAATTAACTATGTGGCTCCACTGGTCAGAAACGcacagtgaggaggaggaggatgttCGCTGTGCAGGAGTGAGTGAGTCTGCGGTGCCAAATGGCGTTTGTTTATGGATGGATTCGCTTCTGtcgtttattttatatttgatttgaaattGACTGTTGTAAAACGGAGGCTGCAGTCTTGTGTGCTGGTTGGTTGGTTTGGGGGCAGGTGGGCACAACCTGGAGCGAAAACTGGAAACcagcacaaaaaaataaaacactcccCCTGGTGGACGCCTCCAGAGCTGCAGCAGCCGCTATTGGAAGGAAGCTCCTAGGATGTCCCTTTTACGCAAGaatgtcattgttgtttttttgtttcatcttatttctctctctgcattttaGTGTTTGGGTTTTCCTTCAGGGCTTGTGTACACATCCTCACACTGCTAAAACTCACTGGTGctgaatgtgtttattcagttagaatgttataaataaatgtaattaattaattaaaaacacacacacagaaaatgaatattCCAGCCCCTGACCCCTGGGAGAAATGGCTTCCAatgtctgtgcttttttttcttattttttttcttatttttaaagtgtatttaagaaaagtatttatttcttttttatttttttatttttgtggttatAGGCGTGTTCTCTCTGTGGggagttgtgtgtttgtgggggggcAGTATTGTGCTGGCTGTGGTGCCAGGGTGGACGGGGCTGCTCTTCCTCTCGCTCAGCAAGGCTCGTGAGTTGGTAAATTTGCACAGTGTGGGTCCTAAATGCACTTGACGACCGGTGCTCCGAACTCTCCTACTGCTGGGTGGTGGATAAACGTATTCATTAGGGCAATtaaggatttaattaattaaatattcacaatttaagttctgtgtgggtgggggggctgacTGGTACACTGAGACACTGCCTGAAACATTTATTCCAATACTGaggcactgagacactgacggAAACTCTCATTCAGACACTGACTGGTCTGTTTGCAGTCCACAGCGGGGGCCCCGGGAGCCACTTTGGCCCTCTATCCTACTGCCCTGGCAGAATGAATGTTCGGCGCACACCATTCTGTATCCCTCTATCCCTGCACAGCCCCTTTTAAGGGACAGTGTGGTTGTGCAGGGCCTGTGGTATAGAGAGACTGGTGGGCAGGAGGTAGTGGTTTCTAAGAAGGGGACCATCTGTCTGTCATCCTTggatgtattgtattttattttactcccTTTTTTTAGCTGAAAATGTTTGAAAGGGGAATCTGATGCGATTGTGTGGAGAAGAGCAAAGCCCTTCCCCCGGGGCCCGTGTCTGACCTGGGACAGGGACAGCGTGGGGTGGAGGCGTGCTGTTGGGGGCGGTTGTACCTTATTTCCAGCCTGCATGCAcaacatctgtttatttttgtttaagccggttgttttgtttgggggtgtttagttttttacacTGTGTGGTTCCTGCACTACGCAAACCGGAGTAGAAGTTTAAAATCacagcaataatacaatacagggGGAGTTacacatataaaatgcatgtcATAACAGCGGaataataaaaccatatttattGTACATAAGATGAGCACAGGCACAGactatttttctgtatttttgtaataatgcaCATGTACGTGCAGCTACAGCTCTCTGTGACTGCTGGCCTGGACTGCCTGCAGTAGGGCTAGGTCACACAAACTGCCCTGTCTAAGCACTGCAGCCCAGACTCCTTCTGATGCCGTGGTCCTCAGTGCTCACCCCAGAAGGGCTCCCCGTGTCTCCCACCCTGGTGAGGTCACCTGACCCAATCTGCACCTGACCCCTGGTCCGCTGTGTCTGAGAAGTGCTTCTTCCCAGACTGCTACCATGGTGCTGGAATAACGGCAACGCTGATTACGCTGCCTTCCTTTGCTCACTGTTTTACATCACATGCGACAGGTGTGTGCAGATTGCTTCCTGTTAATACTTTTTAGGAGCAGGGAGTCACGCTGGGCAGTGTTTGGATGCTGGGAGCGAGTGCCAGATCCCGGTTTTAATATAAACCACCTACACTTCACTCTGTCTTCGAGTGTTTAttaatctgtaaaaataaatatagagagTAATAGAAATAATACATCGTAgcctttcagtttatttttctatgctTGTCTATATACGGTTATGATAACCGAGCCAAATTGTGAACGTAGATTTCAGTCTTCTGTACTTCTGCCCGGGTCGGACGTTGTGCAAAGACTGGATCAAAGAATGATGCTGCTGGGGattcttgtttattatttttttccctaatataattaacaattgtttaattagcttgTAATTGAAAATGATCTATTGTACAACTCTAGCACCCTCTGGTGGAATAAACTTATATTGTAGTACTTtgtgtgtccgtctgtctgaTCAAGAAGTGATGCTCTTGCTTATCTCTCGATTCC

Function

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0051156 glucose 6-phosphate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:0001678 cellular glucose homeostasis biological_process
GO:0005829 cytosol cellular_component
GO:0005524 ATP binding molecular_function
GO:0008865 fructokinase activity molecular_function
GO:0004340 glucokinase activity molecular_function
GO:0019158 mannokinase activity molecular_function

KEGG:

id description
K00844 HK; hexokinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82516 lncRNA upstream 100511 34749498 ~ 34750151 (+) True G65995
TU82517 lncRNA upstream 101319 34749127 ~ 34749343 (+) True G65996
TU82515 lncRNA upstream 102548 34746893 ~ 34748114 (+) True G65994
TU82489 lncRNA upstream 118283 34676911 ~ 34732379 (+) True G65978
TU82472 lncRNA upstream 323587 34526867 ~ 34527075 (+) True G65962
TU82612 lncRNA downstream 159641 35025003 ~ 35026229 (+) True G66072
TU82704 lncRNA downstream 282852 35148214 ~ 35149418 (+) True AMCG00020855
TU82709 lncRNA downstream 301706 35167068 ~ 35170275 (+) True G66151
TU82810 lncRNA downstream 567906 35433268 ~ 35433558 (+) True G66231
TU82838 lncRNA downstream 687541 35552903 ~ 35553230 (+) True G66258
AMCG00020826 mRNA upstream 348460 34498286 ~ 34502202 (+) True AMCG00020826
AMCG00020827 mRNA upstream 357272 34481379 ~ 34493390 (+) True AMCG00020827
AMCG00020819 mRNA upstream 375017 34462466 ~ 34475645 (+) True AMCG00020819
AMCG00020824 mRNA upstream 393761 34452211 ~ 34456901 (+) True AMCG00020824
AMCG00020825 mRNA upstream 398935 34450528 ~ 34451727 (+) True AMCG00020825
AMCG00020840 mRNA downstream 13328 34878690 ~ 34879805 (+) True AMCG00020840
AMCG00020842 mRNA downstream 16129 34881491 ~ 34892993 (+) True AMCG00020842
AMCG00020844 mRNA downstream 54456 34919818 ~ 34927630 (+) True AMCG00020844
AMCG00020843 mRNA downstream 69653 34935015 ~ 34936792 (+) True AMCG00020843
AMCG00020841 mRNA downstream 99260 34964622 ~ 34966485 (+) True AMCG00020841
TU82530 other upstream 63188 34784212 ~ 34787474 (+) True G66008
TU82376 other upstream 439042 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 791197 34059111 ~ 34059465 (+) True G65830
TU82274 other upstream 890980 33954806 ~ 33959682 (+) False AMCG00020796
TU82157 other upstream 1742236 33107873 ~ 33108426 (+) True G65705
TU82596 other downstream 102482 34967844 ~ 35008322 (+) True G66060
TU82706 other downstream 298451 35163813 ~ 35164985 (+) True G66149
TU82915 other downstream 881863 35747225 ~ 35750354 (+) True AMCG00020874
TU82978 other downstream 1002031 35867393 ~ 35908402 (+) True G66362
TU83151 other downstream 1389337 36254699 ~ 36256511 (+) True G66506

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00058635 False 3198 mRNA 0.50 18 NC_007116.7 13870340 ~ 14004206 (+)