RNA id: AMCG00020962


Basic Information

Item Value
RNA id AMCG00020962
length 4560
RNA type mRNA
GC content 0.50
exon number 11
gene id AMCG00020962
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 38491712 ~ 38516342 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCCTGTGCCGAGGGCTGCCAGTCTGCCAGCTCTCTCCAGCCAAACGACTTTCCCAGCCTTTCCCCTTCTGGGAGTTCCAATTGATGGATTCTGACATGGACTATGAGAGGCCAAACGTTGAAACTATCAAGTGCGTGGTGGTTGGAGACAACGCTGTTGGTAAGACCCGCCTCATCTGCGCCCGGGCCTGCAATGCCACCCTCACCCAGTACCAGCTGCTCGCCACACACGTCCCCACCGTCTGGGCCATCGATCAGTACCGCGTCTGCCAGGAGGTTCTGGAGAGATCCCGGGATGTGGTAGATGACGTCAGCGTGTCCCTGCGTCTCTGGGACACTTTCGGGGACCACCACAAAGACCGCCGGTTTGCTTATGGCAGGTCAGATGTTGTAGTGTTGTGTTTCTCCATCGCCAACCCCAACTCTCTGCACCATGTCAAGACCATGTGGTACCCCGAGATCAAGCACTTCTGCCCCAGGGCTCCTGTCATCCTGGTAGGCTGCCAGTTGGACCTGCGCTATGCTGACCTGGAGGCTGTGAACAGAGCACGGCGCCCTCTAGCCAGACCCATCAAGCCCAATGAAATCCTGGCTCCGGAGAAGGGTCGGGAGGTGGCGAAGGAGCTGGGTGTGCCGTACTACGAGACCAGCGTGGTGGCTCAGTTCGGGGTGAAGGACGTGTTCGACAATGCTATCCGCGCTGCCCTCATCTCGCGCCGCCACCTGCAGTTCTGGAAGTCACACCTGCGGAACGTGCAGCGGCCGCTCCTGCAGGCCCCTTTCCTGCCCCCCAAGCCACCGCCACCCATGATCACGGTGCCAGCACCTCCCTCCACCACCGAGGAGCACCCGGGGCGGCTGCTGGAGGACCCACTATGCGCCGACGTCATCCTGGTCCTGCAGGAGCGCCAGCGCCTATTCGCCCATAAGATCTACCTTGCCACCGCATCGTCCAAGTTCTACGACCTCTTCCTCATGGACCTCAGCCCTGAGGAGGAAGAGCGCCGGCCTCCCAGGAACCAGCCCCTGTCCGGCCGGGAACTGCTGATGCGAGCCGCCAGCTTTGACGTGTGCGAGAGCAACGAGGAGGGCGACCACGCCAACCTCCGGGCGTCCACCAGCGATGGCACCCTCAGGGGGGGCAGCTATGAGGGAGGCCGCAGGCCAAGGTTGCTGTCGGCCTGGAGCAGGGCGTTCGTGAGCATCCAGGAAGAAATGGTGGAGGATCCGGTGACCTACAACCCTCGGCTAATGACGGTGGTGCGCATGGACCCCTCTATTCAGATGGGCCCCTTCCGAGCAGTGCTGCGCTACCTGTACACAGGGCAGCTGGATGAGCACGAGAAGGAGCTGATGCACATCGCCCACATTGCTGAGCTGCTGGAGGTGTTCGACCTTCGCATGATGGTGGCCAACATCCTCAATAACGAGGCCTTCATGAACCAGGAGATTACCAAGGCCTTCCACGTGCGCCGAACCAACCGTGTCAAAGAGTGCCTGGCCAAGGGCACCTTCTCAGATGTGGTGTTCAAGTTGGATGATGGTACTATCCTGGCACACAAGCCCCTGCTCATCTCCAGCTGTGATTGGATGGCAGCCATGTTTGGGGGCCCTTTTGTGGAGAGTTGCACCAAAGAGgtTCTGTTCCCTAACACCACTCGTAGCTGTATGCGGGCTGTACTGGAGTATCTGTACACGGGACGTTTCTGCTCCCGCCCGGACCTCGATGCCATGGAGCTTATAGTCCTGGCCAATCGCCTCTGCCTGCCACACCTTCTGTACACAGTGACAGTGCTCATGGAGGCGGCCATGATGGGAGTAGACATTGACGGAGATGTGCTGGTCTACCTCGAGATGGCACAGTTCCACTGTGCTCATCAACTCACTGACTGGTGTCTCCATCACATCTGCACCAACTACAACAGCAACCAGGAGTACTTTGAGAAACACCGCTGGCCACCTGTATGGTACCTGAAAGAAGACGATCACTATCAGAGAGCACGTAAAGAGCGGGAGAAAGAGGACTACCTGTACCAGAAGCGACAGTGCAAGCGCAAATGGCTTTTTTGGAACCTGCCTTCCTCCCCATCCTCaaactcctcctcttcctcctccagctcctctgcTGTCGTCTAATTGGCTTCTGAAAGGCCCGCCCATTCCCCTGGTTACAAAATTCCAGGAGGCAGGGTTAGGAGCAGATATAAAAATGGGTTATCCAGGGGGTCTTCACATTAAGGCCCACTTTCACCAGTGCTTGAGTTTGCGTGTCTGCAAAGGGTTTTTCAGCTGCTGTCCCTTCTTGGACTCCTGGAAGTTAGGAAGATGTTTCAGAGTAGCAGCAAGGATGTGAAGTCATTAAGTAAGGATTTCgtctgcaatacattttttttctgcttcttcaaTTCTGCTTGTGTCCCAAAAAGAGATATTATGAGCATCACTGTGGAAATGTGATAGGCTGGAATTTACAGACTTCTCACATCAAATGAAGCGCAAAAGCTTTCCATTTAAGCCTATGTGGAGCTTGCACAGTGAACACAAATTTAGTTCAAACAGAGGGTATGTCATTCCTAGATGCCTCCACCAGAGGGTGCACTGCAAGATCTGGCTGCTTTTGAGAAGTTTCTGCATGGTGACATTTATATAGTTGTCTTtgcaggtttaaaaataaaaaaagacatttcaaaagaTCTGTTTCTCAATAGTAGGCGAACACCTGACAAAATAACCATCAAAATgctaaaacagaaataaacaaatctcagAGGTTCAagaatgtttttataatgttatCATCATTAATATTGTTGGCCAGGTGGCTTGGCACACCTTTAAGGATGTGTGCAGTTAAACATACCTTAAGATGACCACCATCCAATCTTTTTGATCCTGAAAAACAGCACTTCAAAGAACTGGACTGGGGTGGGGGAGTTGAATTTAGTGGAATATTCACCAGTTTCAATCAGTTACTGTGTACTTTAATGTGGCATTCTGCACGGGAAAGCCCTACCTCAGGGGTAACGAGAGGTCGATTTGATACTTGGAGCCACCCTGTCTTTCTTCAGACTAGAAGAATCAACCCAGACAGAAACAGGATATGAAACTAGATCAACAGAAACGTTCTAAGCCTTGATAGCCTTCCAATTATAGTCTACAGCTGTGTTATTTCtggatgtttgtgtgtttcttgtggCGGTGAAACAGTGATCGTGCTGGAGAACCCATCTGTGAGCGTCCTGTGTCGTCCCGGTGAtctgtaatgtatttgtgaGAGAAGGACTTTGTCCAATATATTGacaacacgcacacacgcacacacgctaaaataaacacacaatgctCGGCTGTCATTTTGGATGCTGCTGAAATACTGTTGAGCTTGAGGCCAGAGcaggaaaaatgaaattaatatgcTTTCCACCATGAGGGCAATGCTGCCACTGTGTCTAGAACAGCTCTTTCAAATACGCTTGTATTAATGCAGACTGCATACGTACACAAAAAAAGGAtgattttcacacattttctttctagAAACATTGCTTAGCCTACATTAATTTGAGTACAGTATCCAGCTTAGTCACATGAACCACATAGCAAATACTCCTGTTTTAGTGCCTGGTGGGATgctctgtacattttcttttgttgtccTATCAGACTGAGAGATAGGGATTATTTTCAAAGCCTTATAAGAAACATGGAAGAACTGAGTGCATCCCCAGCCTAGTCCCCTTGGCATATATAGAGAAGTGACATCTTGCTTACTCAGTAATGCCCCTCACTTGAGATCAATTACCATCAGATCTGAAGTAGCTGGCTTTGGAAAGCAAGTGGGCTCAAGTTTCGTATTCCCTGGCCTACACAGCGTGAGCATCGTGGTGCCGCGTGGGCAATGAGATCAGTTCTGCTGTGAGAGAGTCTGGAGTGATGAGAGGGAAGGGATGAGGGACAAATGTATCCTCTTGAGAAGTACATCGTCCACGATAACGCTCCAGCTGGGCCACTCAGGGACACGACGCACTCCCATGATGACTGATCGGGCTTTTTAACAGACACCTGTGGACCAGCTGTTAGAAGGGTTGAACATGATCAGTGGATCTACCCTGGGCTTTTGAGTTTCTACCTGtttgtcagtgtgctgtgtttgttctgtggggaatcaattgaaatgtattgtgtttctttaaCCCTTGGTCTTTCTCCAGCCTCCTCTGGCTAACAAAGTCTTGTTGTGGCTTACAGACATTGTACACTTTGGACAATATAAGCTTATAGCACTTGCACTGTTCTGAAATCAACTTCAGTATTGGACTATTGAGTTTTTCTTTGGTATTTTATCCAGGTTTCTTATTTATGTAGGTTacgtttatttttgtatgtagttGAACCTAAAGGCTCTTCTCAAAGGCTTGCTTTGCCTAGTcttttttatgaatgaatgagtgaCAAAGAATGAATCAAAGTTAAGGtactaatacattttaagcatATAAAACAGCATCTTTGTTTTAGGCTTGAAATTTTAGAAATGGCTCCTGATTTTGTCGAAAA

Function

GO: NA

KEGG:

id description
K07868 RHOBTB1_2; Rho-related BTB domain-containing protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83593 lncRNA upstream 66460 38424712 ~ 38425252 (+) True G66887
TU83568 lncRNA upstream 215418 38275990 ~ 38276294 (+) True G66865
TU83564 lncRNA upstream 247237 38240690 ~ 38244475 (+) True G66861
TU83538 lncRNA upstream 368125 38121779 ~ 38123587 (+) False AMCG00020954
TU83521 lncRNA upstream 426047 37974803 ~ 38065665 (+) True G66826
TU83691 lncRNA downstream 494237 39010579 ~ 39010849 (+) True G66970
TU83716 lncRNA downstream 533079 39049421 ~ 39049631 (+) True G66995
TU83754 lncRNA downstream 788955 39305297 ~ 39305587 (+) True G67027
TU83778 lncRNA downstream 1232815 39749157 ~ 39749361 (+) True G67048
TU83931 lncRNA downstream 2047860 40564202 ~ 40570215 (+) True AMCG00020993
AMCG00020956 mRNA upstream 216557 38259518 ~ 38275155 (+) True AMCG00020956
AMCG00020955 mRNA upstream 263608 38226246 ~ 38228104 (+) True AMCG00020955
AMCG00020954 mRNA upstream 354639 38117062 ~ 38137073 (+) True AMCG00020954
AMCG00020950 mRNA upstream 379813 38106012 ~ 38111899 (+) True AMCG00020950
AMCG00020951 mRNA upstream 459746 38030728 ~ 38031966 (+) True AMCG00020951
AMCG00020963 mRNA downstream 171821 38688163 ~ 38694505 (+) True AMCG00020963
AMCG00020964 mRNA downstream 240393 38756735 ~ 38772815 (+) True AMCG00020964
AMCG00020965 mRNA downstream 268537 38784879 ~ 38812254 (+) True AMCG00020965
AMCG00020967 mRNA downstream 364254 38880596 ~ 38885107 (+) True AMCG00020967
AMCG00020966 mRNA downstream 382603 38898945 ~ 38901605 (+) True AMCG00020966
TU83200 other upstream 1574276 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 2235201 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 2583310 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 2741358 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 3326727 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 1804771 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 2535130 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 3081881 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 3536588 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 3909769 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00070543 True 1411 mRNA 0.51 4 NC_007119.7 50493095 ~ 50502243 (+)
grasscarp (Ctenopharyngodon idella) CI01000050_03938328_03956122.mRNA False 2680 mRNA 0.48 8 CI01000050 3938328 ~ 3956854 (+)