RNA id: AMCG00020965


Basic Information

Item Value
RNA id AMCG00020965
length 2607
RNA type mRNA
GC content 0.61
exon number 20
gene id AMCG00020965
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 38784879 ~ 38812254 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACCGCGGTGGGGAGAGAGACTTCCAGACCTCTGCGCGGAGGATGGGCACCTCCCTGCTTTTCCAGCTGTCTGTTCACGAGCGCGAGCTGGACCTGGTGTTCCTGGACCACAGCTATGCCAAGCCCTGGAGCGCCCACCCTGACGCCAGCAGCGCCCGGCCGACGCGCATGCTGTTTGTCACACCCCGGCGCCAGCAGGACACCACTGTGGAGACGGACATGCCCCTCGACGTGGAGACGGTGACACCCACGCCCATGCCCCTGTACGACAACCAGAAGGCGCGGAGCGTGATGAATGAGTGCGAGAGGCACGTCCTGTTTGCCCGGACAGATGCTGACGCGCCCCCGCCTCCGGATGACTGGGAGGAACACGTCAACAAGACAGGCTGGTCCATGGCTCAGAACAAGCTGTTCAACAAGGTCCTGAAGGCCCTGCAGGCGGAGAGACAGGCACGGCTGGCCAACGAGGGGGCGTGTAATGAGCCGGTGTTGCGGCGCATCGCAGTGGACAAGTGTGCCAGGAAGGTGCGTCACGCGCTGGCCAGCATCAACTGGGACACTAAGCTCACCCAGTGGCTGCACACCACCCTGGTGGAGTCTCTCAGCCTGCCCATGCTGGCTGCCTACCTGGATGTCCTGCAGACCTTGAAGAGCAAGGTGCCCACGCTGATCGACAGGATGCTGTTGTCATCCTCGGTCAAGACAGGCGCTGCGGGCGCAGAGGCCCTGTCCCTCCTGCTCAAGAGGCCCTGGGACCCGGCGGTGGGCGTCCTGTCTCACAACAAGCCAAGCAAGCTTCCCGGTTCCCCTCTCATCCTGATTGCACCCTCCGGGCCAACCAATCCTGTCTTCTCCACCTCGCGGCGCCTACGCTTCTGGCAGTCGCAGCTGTCCTGCCTAGGGAAGGTCATCCCCATTTCCACTCACCTGGTGAACAGCGGGGCCAATGTGAGCCTCACTCAGTGCCTGGAACACATGGTGGGCGCAGTGAGGAGCAAAGTCCTGGAGGTGCACAGTCACTTCCCCCACAAGCCCATCATCCTGGTGGGCTGGAATGTGGGAGCGCTCATCAGCTGTCACGTCTCCTTGATGGAGTACGTCACTGCGGTGGTGTGTCTTGGATTCCCACTGTTCACTATTGATGGGCCCAGAGGGGATGTGGATGATCCGTTGTTGGACATGAAGACCCCAGTGCTGTTTGTGATTGGCCAGAACGCCTTGCAGTGTGGCGCGGAAGCCATGGAGGAGTTCAGGGAGAAAGTCCGGGCCGACAACAgtatggtggtggtggggggggcagatGACAAcctcagGATCAGTTCCACAAAGATGAAATCGGAAGGTCTGACCCAGAGCATGGTGGACAGGTGTATTCAGGATGAGATCGCCGACTTCCTGACTGGGGTGCTGACCCGGGCGGAGAGCCACAGCTCCAGCGAGCCCCGCGACCTGGACacggagaagaagaagaagccaCGGGAATCCCGTCGAGAGCTGCCCTTCGAGCTGGAGAGGAGCCGGCCGGCCTCCCCGGCTGTGCGCGTGCCCATCTCCCCCtcagggtcagagGATATGTCCAGTGTCTCCAGTAGCCCGGCCTCTAGCCCCAAGACCAAAGCCTCAACCCTCTCTCCAGCTCAGAAGTCCAGTCTGATCACAGCCACCCAGCTCCTCAAGACTCACATGCAGAGATCGGGGACTGTTCTCACTCACAAGCAGGCACAAGTGCCGGTGTCCAGTGACCAGACTGAGGGACTGGAGAGAGATGACCTGAGGGCACACCTGAAGAGGAGACAGACACCCAGCCCTACTCCAGCCAAGCCCTCCAAGAGAGCCAAGATCAAGGTCACCATCCTGTCCCACGGGGAGGCAACTGGTGGCATGAACAGTGCGGCAGCTCAGGAAGGAGCTGCAGGGAAGCCTCTGACTGTGACAGTGGGACAGTCTGTCCCTGGAGCCAAGGAGCTGTCTGGTCTTCTCACAGCACAGAGTCCCGGGGGGTCCGGCAGCGTGGCCCCCAGCACTTTCCACAGCCTGCAGACACGCATGGTGTCTGGGTCCTCCTCGCCTGTCCAGACACAGGCTCCCGCAGCTGCTCAAGGCACCCCCTCTGCCAGCAGCTTGCTCCAGGGCCTGAGCTTCAGCCTTCAGGAGATTGTTACCAAGTCTCCCAGCCTGCCCTCCACAGCTGCCAGTGTGGGGAACAGCACTCAGGTAACCTACACCTGGAACAGACCCACTGGACCACAGGCTCCAGGAATGAAGAGCCAGGGTCAGGTCCTGGCCGCTGTCACCACATGTAGCGGGACCCTGGTCAGAACCCTGCCTGTGGTCACTACAGGGGCAGGTGGCGGCACCAAAACCACACATATCCACCAGCTTCTCACCAATGGAGGCCTAGCCAAACTCGCCAGCAGCCTGCCCGGACTGGCGCACATCTCCAACCAGACAACCGGCCTCAAAGCACCCACCACAATCACAGTGACCTTAAGAGGGCAGCCCAACAGAGTGACCACCCTCAGCCAATCGGCAACAGGTGTCCCTGTGGTGAGACCCTCTGATATACAGGCTGTGTATTTTGAGAGCAACTGTGCCACTCAATGA

Function

GO: NA

KEGG:

id description
K16719 KANSL3, RCD1; regulatory NSL complex subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83593 lncRNA upstream 359627 38424712 ~ 38425252 (+) True G66887
TU83568 lncRNA upstream 508585 38275990 ~ 38276294 (+) True G66865
TU83564 lncRNA upstream 540404 38240690 ~ 38244475 (+) True G66861
TU83538 lncRNA upstream 661292 38121779 ~ 38123587 (+) False AMCG00020954
TU83521 lncRNA upstream 719214 37974803 ~ 38065665 (+) True G66826
TU83691 lncRNA downstream 198325 39010579 ~ 39010849 (+) True G66970
TU83716 lncRNA downstream 237167 39049421 ~ 39049631 (+) True G66995
TU83754 lncRNA downstream 493043 39305297 ~ 39305587 (+) True G67027
TU83778 lncRNA downstream 936903 39749157 ~ 39749361 (+) True G67048
TU83931 lncRNA downstream 1751948 40564202 ~ 40570215 (+) True AMCG00020993
AMCG00020964 mRNA upstream 12064 38756735 ~ 38772815 (+) True AMCG00020964
AMCG00020963 mRNA upstream 90374 38688163 ~ 38694505 (+) True AMCG00020963
AMCG00020962 mRNA upstream 268537 38491712 ~ 38516342 (+) True AMCG00020962
AMCG00020956 mRNA upstream 509724 38259518 ~ 38275155 (+) True AMCG00020956
AMCG00020955 mRNA upstream 556775 38226246 ~ 38228104 (+) True AMCG00020955
AMCG00020967 mRNA downstream 68342 38880596 ~ 38885107 (+) True AMCG00020967
AMCG00020966 mRNA downstream 86691 38898945 ~ 38901605 (+) True AMCG00020966
AMCG00020968 mRNA downstream 141231 38953485 ~ 38972284 (+) True AMCG00020968
AMCG00020969 mRNA downstream 172623 38984877 ~ 39004829 (+) True AMCG00020969
AMCG00020972 mRNA downstream 200457 39012711 ~ 39027527 (+) True AMCG00020972
TU83200 other upstream 1867443 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 2528368 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 2876477 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 3034525 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 3619894 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 1508859 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 2239218 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 2785969 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 3240676 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 3613857 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile