RNA id: AMCG00021005



Basic Information


Item Value
RNA id AMCG00021005
length 327
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00021005
representative False

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41051472 ~ 41062527 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atgtCTTTCGAGACTTCTCACTCGCGCCGAGTGTGCCCGGTCGTCACCGGGAACAAATTCGACACAGCCCACCGCAAAAAAGCAGTGGCTAACATCTTCGAAAATGTCAAACAGGACGCAATGCTGAAACTCTTCAAGAAATCTGGTGACATGAAGGCGGAGGAGAGAGCGAAGAGCATCTTCTCATTTGCCCAAGACCCAGAGGAAACGGCCAAAGCCTTGATGGCACTGAAACAGAGGAAAAAAGATAAATTTCTGCAGATCGTGGGTTTGGCTAGGGCCCCGTTCCTCGTACCTGGGGTCCGTTCATTGTACATGGATAAGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84037 lncRNA upstream 12449 41038854 ~ 41039096 (+) True G67272
TU83981 lncRNA upstream 85633 40950099 ~ 40965912 (+) True G67221
TU83965 lncRNA upstream 260074 40785761 ~ 40791471 (+) True G67207
TU83966 lncRNA upstream 260074 40786685 ~ 40791471 (+) False G67207
TU83938 lncRNA upstream 476689 40573554 ~ 40574856 (+) True G67182
TU84078 lncRNA downstream 241660 41304187 ~ 41305221 (+) True G67309
TU84079 lncRNA downstream 269739 41332266 ~ 41397674 (+) True G67310
TU84093 lncRNA downstream 445080 41507607 ~ 41508101 (+) True G67322
TU84155 lncRNA downstream 556768 41619295 ~ 41619609 (+) True G67371
TU84182 lncRNA downstream 674720 41737247 ~ 41854669 (+) True G67393
AMCG00021001 mRNA upstream 111979 40924447 ~ 40939566 (+) True AMCG00021001
AMCG00021002 mRNA upstream 138398 40910435 ~ 40913147 (+) True AMCG00021002
AMCG00021000 mRNA upstream 212772 40822569 ~ 40838773 (+) True AMCG00021000
AMCG00020999 mRNA upstream 252437 40758497 ~ 40799108 (+) True AMCG00020999
AMCG00020993 mRNA upstream 483513 40555966 ~ 40568032 (+) False AMCG00020993
AMCG00021007 mRNA downstream 28706 41091233 ~ 41115596 (+) True AMCG00021007
AMCG00021010 mRNA downstream 148904 41211431 ~ 41212049 (+) True AMCG00021010
AMCG00021011 mRNA downstream 222407 41284934 ~ 41299165 (+) True AMCG00021011
AMCG00021014 mRNA downstream 306100 41368627 ~ 41370418 (+) True AMCG00021014
AMCG00021016 mRNA downstream 396950 41459477 ~ 41518845 (+) True AMCG00021016
TU83857 other upstream 729724 40321113 ~ 40321821 (+) True G67108
TU83200 other upstream 4134109 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 4795034 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 5143143 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 5301191 35747225 ~ 35750354 (+) True AMCG00020874
TU84094 other downstream 535696 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 990403 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 1363584 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile