RNA id: AMCG00021010


Basic Information

Item Value
RNA id AMCG00021010
length 498
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00021010
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41211431 ~ 41212049 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCACAATTAAACGGCGGTGGAGGAGATGACTTGGGAGCGAACGACGAAATGATCTCTTTTAAAGACGAAGGAGAGCAAGAggaaaaaatatcagaaaatgtGTCGGCCGAGAGGGATTTGGACGATGTAAAATCCTCCCTTGTAAACGAGTCGGAAAATAACAGCAGTTCATCAGATTCCGAGCAAGCGGAGAGGCGTCCCCAACCGAGGCAAGACTCAGAAAGTTACGAGAAACCCAGAGATTACTTTAGTGAAGGTAAccataaaataagttattcattgattttgctcattttaaaaCGGCACGTTTTATTATTAACTTACTtctttcacttttcattttactCTCATGCCCCTCTCCCAAAAGCCTTAAGACGACAGCAAGATGGAGGCTTTTTTAAGAGCCCCCCTTATCCTGGATATCCGTTTCTAATGATCCCAGATCTTACGAACCCCTACCTATCCAACGGGTCGCTATCGCCCAGTGCAAGAACG

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03018 RNA degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84037 lncRNA upstream 172335 41038854 ~ 41039096 (+) True G67272
TU83981 lncRNA upstream 245519 40950099 ~ 40965912 (+) True G67221
TU83965 lncRNA upstream 419960 40785761 ~ 40791471 (+) True G67207
TU83966 lncRNA upstream 419960 40786685 ~ 40791471 (+) False G67207
TU83938 lncRNA upstream 636575 40573554 ~ 40574856 (+) True G67182
TU84078 lncRNA downstream 92138 41304187 ~ 41305221 (+) True G67309
TU84079 lncRNA downstream 120217 41332266 ~ 41397674 (+) True G67310
TU84093 lncRNA downstream 295558 41507607 ~ 41508101 (+) True G67322
TU84155 lncRNA downstream 407246 41619295 ~ 41619609 (+) True G67371
TU84182 lncRNA downstream 525198 41737247 ~ 41854669 (+) True G67393
AMCG00021007 mRNA upstream 95835 41091233 ~ 41115596 (+) True AMCG00021007
AMCG00021005 mRNA upstream 148904 41051545 ~ 41062527 (+) False AMCG00021005
AMCG00021001 mRNA upstream 271865 40924447 ~ 40939566 (+) True AMCG00021001
AMCG00021002 mRNA upstream 298284 40910435 ~ 40913147 (+) True AMCG00021002
AMCG00021000 mRNA upstream 372658 40822569 ~ 40838773 (+) True AMCG00021000
AMCG00021011 mRNA downstream 72885 41284934 ~ 41299165 (+) True AMCG00021011
AMCG00021014 mRNA downstream 156578 41368627 ~ 41370418 (+) True AMCG00021014
AMCG00021016 mRNA downstream 247428 41459477 ~ 41518845 (+) True AMCG00021016
AMCG00021009 mRNA downstream 366335 41578384 ~ 41589019 (+) True AMCG00021009
AMCG00021013 mRNA downstream 418630 41630679 ~ 41631432 (+) True AMCG00021013
TU84041 other upstream 158873 41051472 ~ 41052558 (+) True AMCG00021005
TU83857 other upstream 889610 40321113 ~ 40321821 (+) True G67108
TU83200 other upstream 4293995 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 4954920 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 5303029 35867393 ~ 35908402 (+) True G66362
TU84094 other downstream 386174 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 840881 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 1214062 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU241399 True 1096 lncRNA 0.46 3 CI01000050 2594983 ~ 2597587 (+)
rainbow trout (Oncorhynchus mykiss) TU241399 True 451 lncRNA 0.51 2 NC_048566.1 101464915 ~ 101466757 (-)
tiger barb (Puntius tetrazona) TU76054 True 257 lncRNA 0.50 2 NC_056705.1 8594662 ~ 8595498 (-)
mexican tetra (Astyanax mexicanus) TU76054 True 1713 TUCP 0.49 7 NC_035902.1 34713218 ~ 34751563 (+)