RNA id: AMCG00021382


Basic Information

Item Value
RNA id AMCG00021382
length 585
RNA type mRNA
GC content 0.63
exon number 3
gene id AMCG00021382
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16120188 ~ 16121592 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGCGATATGGCTGTACCAGTTCCGTCTGATCGTGATTGGCGACTCCACCGTGGGCAAGTCGTGCCTGATCCGTCGCTTCACCGAGGGACGCTTCGCCCAGGTGTCTGACCCGACGGTCGGCGTGGATTTCTTTTCGCGGCTGGTGCTATGTAGGTCGATCACCCGGGCCTACTACCGAAACTCGGTGGGAGGGCTGCTGCTGTTCGACATCACTAACCGGCGGTCCTTTCAGAACGTGCACGAGTGGCTGGAGGAGGCGCGCAGCCACGTGCAGCCGCACCGCATCGTCTTCCTGCTGGTGGGGCACAAGTGTGACCTGGAGGCCCAGCGGCAGGTGAGCCGGCAAGAAGCGGAGAAACTAGCGGGGGCGTACAGCATGCGGTACGTGGAGACCTCGGCCCGTGACGCCATCAACGTGGAGAAGGCCTTCACCGACCTGACACGCGATATCTTCGAGCTGGTCAAGCGTGGTGACATCACCGTGCAGGAGGGCTGGGAGGGGGTGAAGAGCGGCTTCGTGCCCAACATGGTGCACTCCTCCGATGAGGCCACCAAGAGCGACCGCCGTTGCCTGTGTTGA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07925 RAB39B; Ras-related protein Rab-39B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106818 lncRNA downstream 99446 15976565 ~ 16020742 (-) False G85580
TU106817 lncRNA downstream 99446 16015533 ~ 16020742 (-) True G85580
TU106831 lncRNA downstream 108486 16011231 ~ 16011702 (-) True G85592
TU106828 lncRNA downstream 118967 15993252 ~ 16001221 (-) True G85590
TU106829 lncRNA downstream 123123 15993252 ~ 15997065 (-) False G85590
TU106916 lncRNA upstream 57570 16179162 ~ 16266798 (-) True G85658
TU106917 lncRNA upstream 144417 16266009 ~ 16266798 (-) False G85658
TU106982 lncRNA upstream 349960 16471552 ~ 16471759 (-) True G85716
TU107056 lncRNA upstream 444125 16565717 ~ 16566021 (-) True G85771
TU107100 lncRNA upstream 569975 16691567 ~ 16757611 (-) True G85802
AMCG00021376 mRNA downstream 112109 16002219 ~ 16008079 (-) True AMCG00021376
AMCG00021364 mRNA downstream 249658 15862894 ~ 15870530 (-) True AMCG00021364
AMCG00021355 mRNA downstream 585054 15528669 ~ 15535134 (-) True AMCG00021355
AMCG00021357 mRNA downstream 594005 15515619 ~ 15526183 (-) True AMCG00021357
AMCG00021356 mRNA downstream 630791 15480851 ~ 15489397 (-) True AMCG00021356
AMCG00021388 mRNA upstream 88146 16209738 ~ 16212465 (-) True AMCG00021388
AMCG00021392 mRNA upstream 94844 16216436 ~ 16217455 (-) True AMCG00021392
AMCG00021387 mRNA upstream 112725 16234317 ~ 16242423 (-) True AMCG00021387
AMCG00021393 mRNA upstream 235673 16357265 ~ 16359007 (-) True AMCG00021393
AMCG00021396 mRNA upstream 317844 16439436 ~ 16452644 (-) True AMCG00021396
TU106219 other downstream 2068291 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 2202320 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 2492441 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 3318602 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 3592494 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 119412 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 525547 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 525547 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 1177288 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 1298012 17419604 ~ 17423418 (-) True G85953

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038794 True 1367 mRNA 0.50 3 NC_007132.7 30540465 ~ 30545121 (-)