RNA id: TU106917


Basic Information

Item Value
RNA id TU106917
length 310
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id G85658
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16179162 ~ 16266798 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGACATGCCCTACCATACCTCCTGCATATTACACTGCATACCCCACTGCATCTGTGCAGCACACTCATGCTGTGCTTCTCATCTGCATTCACAGGAAACACCACCTAGATCCCACCATCAATTACAAGGTGGAGAAGGATGAGGTGGAGGCACTGATCCCGAAGGGTGCATCTGAATTGACCAAACAGCAGATTCGCTACCTGCTGGAGACCCGGCTGACTGCCGATAAGACTCTGCGTCTGCTGCTCACCACCTTCAGCAGCCTGAGAGAGgagcttcttcacctgcaggaTGACCTCCGGGTATgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106818 lncRNA downstream 245267 15976565 ~ 16020742 (-) False G85580
TU106982 lncRNA upstream 204754 16471552 ~ 16471759 (-) True G85716
TU107056 lncRNA upstream 298919 16565717 ~ 16566021 (-) True G85771
TU107100 lncRNA upstream 424769 16691567 ~ 16757611 (-) True G85802
TU107125 lncRNA upstream 541008 16807806 ~ 16809320 (-) True G85824
TU107139 lncRNA upstream 556018 16822816 ~ 16823079 (-) True G85837
AMCG00021387 mRNA downstream 23586 16234317 ~ 16242423 (-) True AMCG00021387
AMCG00021392 mRNA downstream 48554 16216436 ~ 16217455 (-) True AMCG00021392
AMCG00021388 mRNA downstream 53544 16209738 ~ 16212465 (-) True AMCG00021388
AMCG00021382 mRNA downstream 144417 16120188 ~ 16121592 (-) True AMCG00021382
AMCG00021376 mRNA downstream 257930 16002219 ~ 16008079 (-) True AMCG00021376
AMCG00021393 mRNA upstream 90467 16357265 ~ 16359007 (-) True AMCG00021393
AMCG00021396 mRNA upstream 172638 16439436 ~ 16452644 (-) True AMCG00021396
AMCG00021406 mRNA upstream 236943 16503741 ~ 16504379 (-) True AMCG00021406
AMCG00021404 mRNA upstream 278955 16545753 ~ 16550094 (-) True AMCG00021404
AMCG00021411 mRNA upstream 300341 16567139 ~ 16572494 (-) True AMCG00021411
TU106928 other downstream 23354 16241004 ~ 16242655 (-) False AMCG00021387
TU106219 other downstream 2214112 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 2348141 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 2638262 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 3464423 12719864 ~ 12801586 (-) True AMCG00021259
TU107075 other upstream 380341 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 380341 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 1032082 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 1152806 17419604 ~ 17423418 (-) True G85953
TU107350 other upstream 1280364 17547162 ~ 17552766 (-) True G86010

Expression Profile