RNA id: AMCG00021784


Basic Information

Item Value
RNA id AMCG00021784
length 1780
RNA type mRNA
GC content 0.53
exon number 7
gene id AMCG00021784
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29788734 ~ 29804747 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCTGCTGACGTTGGTGAGGAGGCAGTGCTGCTCTGCAAATGCACTGAAACAGCTGGGAGAGAGTACACAGCAGAGAAGGAGCGGGCGAGTGCTGGACGGGCTGGATGTAGCGTGTTTTGCAAGGGAAGAGACGGACACTCGTTTGTTATTTTGAACAAGGAAGGGCAGACCAAAGATACATTATTGCAGACCAAAATGCACTGCCTTGTTACGCGGCCGGACTCGGTGGTGATGGAGGTGGAGGTTGATCCGAAGGCAAATGGAGAGGACTGTCTGAATAAGgttTGTAGGAAGTTGGGAATTATAGAGGTGGATTACTTCGGGCTGCAGTTTTCCGGCAGCAAAGGGGAGAGCTTATGGCTGAATCTGAGAAACCGCATCTCCCAGCAGATGGACAACCTGACTCCCTGTAGGCTGAGGCTACGAGTCAAGTTCTTTGTGGAGCCACATCTCATACTACAGGAGCAGACACGACACCTGTTTTTCATGCATGTGAAGGAGGACCTTCTCGGGGGCCGTCTGCGGAGCACGCCTGAACAAGCAGAGGAGCTCGGTGCCCTGGTGGCCCAGGCAGAGCTTGGAGACTTTAACCAGAACACAGCCAAATACTTCTACTATGAGTTCTGTGGAAAGGACCCCAGCCCCACCGTCCTCAACAGCATCATAGCAAAGCACAAATTACTGGAGGGAATGAGCCCTCAGTCAGTGGAGTACCAGGCCATGCAAGTTATATCATCCCTGGAGAACTATGGAGTCGAGTGGCATTGGGCGAGGGATGCAGAAGGGCAGAAGTTGGCAATCGGAGTAGGGCCAGAGGGAATCTCAATCTGCAAGGAAGACTTCAGTCTCATGAACAGGATCGCCTATCCAATTATTCAAATAGCTACCCAGTCGGGAAAGAACGTGTATCTGACTGTGACAAAGGAAACCAGCAACAGTGTTGTGCTTATGTTCAAGCTCATCAGCACCAGAGCTGCCAGTGGGCTTTACAGAGCAATAACTGAAACCCACGCTTTCTACAGGTGTGACACGGTGACGAATGCCGTCATGATGCAGTACAGCCGGGACTTCAAAGGGCACTTGGCCTCCCTGTTCCTCAATGAAAACATCAACCTGGGGAAGAAGTACGTCTTCGACATCAAGCGCACCTCCAAGGAGGTGTACGACCACGCGCGCAGGGCCCTGTACCACGCGGGCATTGTGGACTTCGTGTCGCAGGGGGAGCGTAGCCCCCTGAGTTCCCCGCTCAAGGCCTCGGAGGGCGAGCTGACCTGCAGCACGTGTGAGGGGCTGAGCTGCCAGCAGAGCCGTGTGCTGCAGGAGAAACTACAGAGGCTAAAGGAGGCCTTGCTGTGCATGCTGTGCTGTGAGGAGGAGATCAACTCCACCTTCTGCCCCTGCGGACACATGGTCTGCTGCCAGTCCTGTGCTGCCCATCTCCAGtgtTGTCCAGTGTGCCGCTCGGACGTGGAGCATGTTCAGCACGTCTACCTGCCTACCTGCAATAGCCTTCTCAACCTGGCCGTGACGGGCACAGCACCTCTTGCCATCCACCGAGCAGTGGCAGCACAACACTGTAGTGCCAAGGACTACTCCAAAAGTGACAAAATCTGCCAGACATAAAGCAGGCTTGCTCCTGTGGTTTCTGAAGGCGGACAATGAGTTTGTGCAGAGCCACCTTCCTGTCCCCTTGGGCAGGGAGTATCCGGATCTGCTACAAGAACTTAAAAAAAGCCAatgaggatatatatatatatatttttttttttatatatata

Function

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0016567 protein ubiquitination biological_process
GO:0007369 gastrulation biological_process
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005515 protein binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K10637 MYLIP, MIR; E3 ubiquitin-protein ligase MYLIP

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110328 lncRNA upstream 62772 29725159 ~ 29725962 (+) True G88403
TU110262 lncRNA upstream 400133 29376521 ~ 29388601 (+) True G88352
TU110269 lncRNA upstream 403409 29383870 ~ 29385325 (+) False AMCG00021779
TU110266 lncRNA upstream 406461 29378575 ~ 29382273 (+) True AMCG00021779
TU110209 lncRNA upstream 473175 29307879 ~ 29315559 (+) True G88308
TU110374 lncRNA downstream 170294 29975041 ~ 29978559 (+) True G88440
TU110389 lncRNA downstream 242381 30047128 ~ 30048888 (+) True G88450
TU110396 lncRNA downstream 332791 30137538 ~ 30139284 (+) True G88454
TU110394 lncRNA downstream 337448 30142195 ~ 30219496 (+) True G88452
TU110430 lncRNA downstream 451277 30256024 ~ 30258197 (+) True G88485
AMCG00021782 mRNA upstream 6164 29753411 ~ 29782570 (+) True AMCG00021782
AMCG00021781 mRNA upstream 140051 29606140 ~ 29648683 (+) True AMCG00021781
AMCG00021779 mRNA upstream 403411 29382085 ~ 29385323 (+) False AMCG00021779
AMCG00021772 mRNA upstream 513387 29266438 ~ 29275347 (+) False AMCG00021772
AMCG00021769 mRNA upstream 565422 29210277 ~ 29223312 (+) True AMCG00021769
AMCG00021785 mRNA downstream 10743 29815490 ~ 29830397 (+) True AMCG00021785
AMCG00021790 mRNA downstream 272625 30077372 ~ 30091490 (+) True AMCG00021790
AMCG00021792 mRNA downstream 289122 30093869 ~ 30103130 (+) True AMCG00021792
AMCG00021791 mRNA downstream 314273 30119020 ~ 30126407 (+) True AMCG00021791
AMCG00021794 mRNA downstream 380573 30185320 ~ 30200518 (+) True AMCG00021794
TU110265 other upstream 406461 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 406461 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 723395 29060887 ~ 29065339 (+) True G88276
TU110128 other upstream 1010001 28778315 ~ 28778733 (+) True G88238
TU109668 other upstream 3591658 26152068 ~ 26197076 (+) False AMCG00021703
TU110433 other downstream 462655 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other downstream 584090 30388837 ~ 30394221 (+) False AMCG00021803
TU111156 other downstream 5121806 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 5233092 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 5406386 35211133 ~ 35263537 (+) True G89142

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028074 True 2600 mRNA 0.46 7 NC_007130.7 26340736 ~ 26378655 (+)