RNA id: TU116153


Basic Information

Item Value
RNA id TU116153
length 2093
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G78490
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1572594 ~ 1575125 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGTAACGGTGGAAAAAACGCATGTCACACATGGAACAAGCATACGGCTTCACTCCTAAATGACCAGAGCAAAATATTAACCATACGCATCATCTCAATAACACAACCCAACAAACACCAATTGATAATCAAAGACGGTTAGCCTAATTTTACATTCTGATCCGGTTGCCATGTTATTATGAATACATGGTTTAATTCTCTAACAAAGCGTTTATGTTGAAACGTATATTTTCAGAATACATCATTAAGTGACAGTAGTTGTACTTGGAAGTGCAGAAGACTCTTCAATCTCTAAATCAACCcgaaaatgttcttttgaaattttgcagcaataaatatacttaaaaccCTTTTGTGCATATCTAGGCATCGTTAGAATAGCGtcttccaaaacaaaacaaaaaaatgtgatcTACATCCCACTCAGAAAACAATGAAACGAGTACCGTGAGTCAAACATAGAGCGGTTTAATCGTGTGAAACTGGAAATTCGCCATTCTTGCCACGACGCTTCATGCTAACTTTCACCGCTCCTCTTCCGAAAGCCTTCTTAATAAAATCGCAACGgtataaaaaaaacgtttgacGGTGAAAGTGTACAATTTTGAACGTCACTTTGTGTTCGTTTCTTTGAGATGCTGAAGAAAAGCAGCGGTGTGGGAGGGGTATAAAGAGACGACACATACCCGTGTGGGTGATGGTGTGTCTCTGGAGATGGTAGCGTTGGAAAAACCTCATATCACACATTGTGCAAGCAAAGGGCTTCACCCCTAAATGCAGAGTACTGGTGTTAGAATGGACGTCTGGATATCAGCTTAAAACGCAGCAAAAATAACAGAACATggatagtaataataaaaaaaattgagctTGGAGGggaaaaatctaataataataataataaaaaaacacacacacacacacacacacacacacacacacagtaggcTCATTCTCAGGAAATGGTGCCATTTGTGCCCCATAACTCAAATACAAAAACTGTATCGTAAAACGTATAACAACTCCCCTTTTAGATTTAATATGAAATTGCCACTCCGCAAAATTTCTAGTAAATGGTAATGATATGTAGTTTTGAGGTTGCTGCATGACACAAGTGTAATTTCTTCTCGCTAGTTCCGTTTATAATGCTGGGGCGGTCAAACCATTTACAATACACTAAACTGCATTCAAATGCAGCATTCTGTGTGGACTTCTAATGGGTCagatgtgttttgttgtttttgcacatgTTGTAAAATATCATGCTCCCCAACGTCTACTATGtgccacttttttttacagcgtaGACAAGGACTGacttaattcttaattctttttCTGCGCGCACAGCTGTGTCTGCCCAGCTTTCGAAGTACACTCAGCCCCAGATGAGCATGGATGACAACTTCGACACACGTGCATTAGACTCAACATTCACCTCGTGCCTGAGCTGTGAACACACACCTTCAGCATGGAGCGTGGTTTTGGAGGATGCAACGGATAGGCCTAACTGCCTCAAACAAAACTGGAGACTAACCGGCGTGATGTCGGTCTGTCGAGACCAgacatacactatattgccAAAGTATTGCACAAACGTGACTTGACCTAAACTTGACTCTAAATTTTTCAGCCGGAATTGTGGTAACAGTTGTTTTAATATACTGCTTCAATGGTACTTGTCAAGGGGTTGGGATATATTAGAAAGGTATTGAGTGGTCAAGTCTTGAATTTCATGTGCTGCAAGCAGGAAAAATGAACACAGGTAGCTACCGATCGAGTCGACGTGCCTCATGACACATGAGCAGCAGAACTGGATTCACGGAAAAAGGTCTTATGAATCATATTTTTAGCTGTTTACCTGGAGCAGCGACGGCGGCAGGGGAAGAAGTGTTTTGCTCTGGGCAATGTTCTGTTGGAAAGCTTGAGTTCTGGCCTTCATGTGGATGTTACAAACCTACTAAATATAAACAGCTGAGTTTTATCGTtttccattcagctgatctctgggtctgggTCTAGCACTTTTAGCGCAACTTAGCATAGATcgttgaatctgattagaccattagcatctttAACTCAAAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116144 lncRNA upstream 9938 1558860 ~ 1562656 (+) True G78484
TU116126 lncRNA upstream 43437 1524347 ~ 1529157 (+) False G78472
TU116127 lncRNA upstream 43437 1524347 ~ 1529157 (+) True G78472
TU116125 lncRNA upstream 48516 1521976 ~ 1524078 (+) True G78471
TU116134 lncRNA upstream 58416 1513879 ~ 1514178 (+) True G78479
TU116194 lncRNA downstream 93897 1669022 ~ 1669695 (+) True G78517
TU116231 lncRNA downstream 191246 1766371 ~ 1766589 (+) True G78540
TU116382 lncRNA downstream 226226 1801351 ~ 1802313 (+) True G78625
TU116417 lncRNA downstream 323608 1898733 ~ 1899063 (+) True G78652
TU116442 lncRNA downstream 361735 1936860 ~ 1939086 (+) True G78674
XM_043251234.1 mRNA upstream 27830 1543622 ~ 1544764 (+) True hoxc6b
XM_043252502.1 mRNA upstream 34580 1536027 ~ 1538014 (+) True hoxc13b
XM_043252018.1 mRNA upstream 54631 1485767 ~ 1517963 (+) False rargb
XM_043252503.1 mRNA downstream 26582 1601707 ~ 1618526 (+) True lima1b
XM_043252681.1 mRNA downstream 56702 1631827 ~ 1633704 (+) True igfbp6a
XM_043252526.1 mRNA downstream 60762 1635887 ~ 1643236 (+) True pip4k2cb
XM_043252587.1 mRNA downstream 69773 1644898 ~ 1650340 (+) True ube2v1
XM_043252584.1 mRNA downstream 75365 1650490 ~ 1657144 (+) True csnk2a4
TU116128 other upstream 61720 1485707 ~ 1510874 (+) False rargb
TU115960 other upstream 380873 1186866 ~ 1191721 (+) True LOC122353696
TU115925 other upstream 495195 1074744 ~ 1077399 (+) False cnbpb
TU115926 other upstream 495195 1074744 ~ 1077399 (+) False cnbpb
XR_006252083.1 other upstream 866044 603138 ~ 706550 (+) False atp2b2
TU116164 other downstream 15619 1590744 ~ 1593125 (+) True G78500
TU116178 other downstream 69506 1644631 ~ 1726097 (+) True G78506
TU116166 other downstream 103112 1678237 ~ 1680177 (+) False nabp2
unassigned_transcript_1592 other downstream 285172 1860297 ~ 1860368 (+) True trnaq-uug_15
unassigned_transcript_1593 other downstream 285708 1860833 ~ 1860904 (+) True trnap-agg_14

Expression Profile