RNA id: XM_043252681.1


Basic Information

Item Value
RNA id XM_043252681.1
length 1186
RNA type mRNA
GC content 0.40
exon number 4
gene id igfbp6a
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1631827 ~ 1633704 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGCTTTCACTGAATATTAAAGCGGGACATCGATAGCCAAAAAGAAGCGGAAGAGAGAAGACcattcactgaaataaaaaaaaggctttcGATCTTCTGAGGTTTTCTGAATTGGACAAAGATGGTTGCTTTTCATTATTTGCTAACACTTTTGGTTATCGTTCAGCTCAGCTTAAATGGCTCCAACTCCCTTGTATTAGGCTTAAAGAGTATCTGTACGTTGTGTAATGGGCCCTCAGGGGAACCCAAGGGCCACAGAGGTGATCGTTTGTCAGGGGAGGAGACCACGGCCGTGTTGGCATTGGGTGAACCCTGTGGGGTTTACACTCTTCCGTGCGCTCAGGGTCTTCGGTGTATCCCTCCTCTCGGAGAGCAAAGTCCCCTTCAGGCACTGCTTCAGGGACGAGGGATctgcaaaaacatcaaaagtaCCTTTACTGACATCCATCCGCCTACAGACTATCATCCATCAACCAACgaaaacagttttgaaaagGGTCCTTGTCGCAAACTGCTTAACACAGTCCTCCAAAGTATAGATCTCACGATTATTCATTCGATTCCGGATATCTACATCCCCAACTGTGACAGACAAGGCTTCTTCAGGAGAAAACAGTGTCGGTCATCGAGAGGAATGCAAAGAGGACATTGCTGGTGTGTTGACGAGAAGGGATCGAAAATATCATCCCGTAAAAGGAGCGATGGAACTATTTCGTGCAACATTGCCTGAGATTTGTGATTCAGCTCGACATCTGATGTACACACGGACCTGAAATCTCTGTAGTAgggactgagagagagagagagatgacagaCACTGAGTACTCGATGACCACAAAGCAAGCAGAATATTTACAATCATTCATCTCCCTCTGGTTGTGAAGAATATGTTTGCAGCGCTGTGTCATTAGTTTGGCTCCATTATTtctgaactatatatatactatatatatatattgttctaaatactatatagaaaaaaagatgatgtACTCCATGAGGAAATATCATTAATGGGCTGTTAATGAactatgcagtatatatttttttcaaattacatatatttatgtcaCATACATATTAGCtgcttatatattaatataattaattaatatattaattgtcCTTTCGGTATACATTTAACtgcctttacttttttttaacactacTACTATGTATCCCGTT

Function

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116153 lncRNA upstream 56702 1572594 ~ 1575125 (+) True G78490
TU116144 lncRNA upstream 69171 1558860 ~ 1562656 (+) True G78484
TU116126 lncRNA upstream 102670 1524347 ~ 1529157 (+) False G78472
TU116127 lncRNA upstream 102670 1524347 ~ 1529157 (+) True G78472
TU116125 lncRNA upstream 107749 1521976 ~ 1524078 (+) True G78471
TU116194 lncRNA downstream 35318 1669022 ~ 1669695 (+) True G78517
TU116231 lncRNA downstream 132667 1766371 ~ 1766589 (+) True G78540
TU116382 lncRNA downstream 167647 1801351 ~ 1802313 (+) True G78625
TU116417 lncRNA downstream 265029 1898733 ~ 1899063 (+) True G78652
TU116442 lncRNA downstream 303156 1936860 ~ 1939086 (+) True G78674
XM_043252503.1 mRNA upstream 13301 1601707 ~ 1618526 (+) True lima1b
XM_043251234.1 mRNA upstream 87063 1543622 ~ 1544764 (+) True hoxc6b
XM_043252502.1 mRNA upstream 93813 1536027 ~ 1538014 (+) True hoxc13b
XM_043252018.1 mRNA upstream 113864 1485767 ~ 1517963 (+) False rargb
XM_043252526.1 mRNA downstream 2183 1635887 ~ 1643236 (+) True pip4k2cb
XM_043252587.1 mRNA downstream 11194 1644898 ~ 1650340 (+) True ube2v1
XM_043252584.1 mRNA downstream 16786 1650490 ~ 1657144 (+) True csnk2a4
XM_043252585.1 mRNA downstream 28381 1662085 ~ 1664340 (+) True tp53rk
XM_043252586.1 mRNA downstream 44522 1678226 ~ 1681200 (+) True nabp2
TU116164 other upstream 38702 1590744 ~ 1593125 (+) True G78500
TU116128 other upstream 120953 1485707 ~ 1510874 (+) False rargb
TU115960 other upstream 440106 1186866 ~ 1191721 (+) True LOC122353696
TU115925 other upstream 554428 1074744 ~ 1077399 (+) False cnbpb
TU116178 other downstream 10927 1644631 ~ 1726097 (+) True G78506
TU116166 other downstream 44533 1678237 ~ 1680177 (+) False nabp2
unassigned_transcript_1592 other downstream 226593 1860297 ~ 1860368 (+) True trnaq-uug_15
unassigned_transcript_1593 other downstream 227129 1860833 ~ 1860904 (+) True trnap-agg_14
unassigned_transcript_1594 other downstream 227342 1861046 ~ 1861127 (+) True trnas-gcu_16

Expression Profile