RNA id: XM_043251962.1


Basic Information

Item Value
RNA id XM_043251962.1
length 3458
RNA type mRNA
GC content 0.44
exon number 15
gene id il17rc
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8207297 ~ 8216886 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aAGCAACCATAACATCAGTAATAGGCTGTGTTTTGAAATACAGCAATACAAGCTAAGCATGTAAAAGagtcttaattaaaaataattaagggTCACATGAGGATGTTTgataactaaatgaaaaatattgttAGATTTTGCTATTTTGAGAGAATTCTATTGAATGTTCCGTGAACTGGCAACCCGATCCCTTGAAGGTGCGTGTAAAtagtacgccaaataaaaatgaaaactcgtGGTATAGATacgcaaaaatggactttgtcGTGTTTATGCTATGCGTTGGGTAGAATTAGGTTTGTGGGTTAGATGAGTATCATGTTTACGCGACAACTGCGCATTATATATACGCCAAACCCATTTTTCGTATAAATACCACGAGTTTTCGCTGTTTTCACGAGACTGAGGTGGAACCGGAGTGgaaataaagattaataaacGAAAACAAAACTCACTGCCCTCTGATATGTATCGGAAATTAGAGGCATTCCAGGCAGAGCAGCAAACatgattcattcacacacacccACGCTATCTGGCAATctgtcacacacagacacacctggGCATACTGGAAGCCAGGTGACTTCTTACCGAACACACATCGACCGACGCTTAGAACCACAAAATTAAATCCGGTATTACAAGAGCTGAGAGTCTGAATcgcagaaaaataaaacattaatcgTTTCTGTCTCCTTACAGACGGAAGTCACAGTATGGCGCGTGACTGCGGTGCCTCGCGCTTCCCGCTCGGCGGAACTTGAGAACCGGACTGTGTATCCGAGCCGAACTGAATATGGTCATCCTGGACTCTACTGAAGCCTCGCAGAGACAACGAAGCGAAGGATATAACCCGTGAGATTTGGGCATTGAGCGGTTTCGATTAATTGTCTCTTGGACACCAGAGCGAAACTGTTGCGCAATGAAGTTTGCGTGGAGGATAGCCCAACTGCTCCTATTGGCCACCGGAAGTGTGTGTTCACTGGAACGAGTCACACACAACCCAGATAACAACGTCACGTGTCCTCAGGCTCTAAACTGCATGATGATAAACACAGATCCCATCACATCATCTGATGTGGTCTGTGGTCCTGTGAACGCGTGTTCTCTGCTCGTGACGTCAAAACTGTGCTGTCACAAGAACGACTGCAAACCCTGTTTGTGGATCGACATCCAGCTAAGTGTTATTCCAGATCCCAAAGAGGAAGAGGACAGAGATATTGAGAGATCCGAATGTGAAGAGGAGCTCAGTGGGGACTGGGATTCGGGATCTGTTTCCATGCCAAACAACACATCAGAAGCTACTATAACAATATGCTACAAACCAGCAGAAATGCAGCGTGAATGGTGCGAGAGATTAGATTTCACAGTGACTTCTACCGCGAGCCTTAAACCTCTCATTATCACTCTGGTGGAGTACAGACATGTTGACTTTGGCAGAACAATGGCGATCACTGTTAGATCATTCAATAAGTCACCAGAAGTTAAGATCGTTGAATTCCCTACATTAACAACAGTTTGTCTTTCATCACACCTCAAGGACATAAAGTGGTGCAAAGgtcCCAATATCACCACTAAAATAGAAGAGAGAGTGGTTAAGGTGCTGTTAGCGGACGAGGATGAAGAAGCTGCCGAACGCCTGTCTCTGTGCATGAAACGTGGAAGAGCAGGGAAATGCTGGCCTTTGCCAAGTAATAAGATTTCACGGGCGTCAGTCACAAGCTGCACGTGTTTCCAGGCGTGGAAAACTTCAGTTCGTACGCAAATCTGTCCTTTTGCAGAGAATACAgaatttaaaaaaaatgtccggAGCAACATTTCAGTGTCTTTAGCCCACATGGAGACAAATGATGGTAAGCCGGTGCTAAGCTGGAAATTAACAGTGCCCTGCAGGATAAGAGCCGATCTCTGGCCCTGTCAGCTTGAGGATGATGGAAATTGCACAGAAGTTGAAGGATTCAGACAGAAATGTAATGGCTGGgaagaaagcaaaacaatattatggGCATCCGGGATGTTCGTCAATATAACGTCTCAGAATCACCAGCAGCTCTGCGTGATGCTCGAAGTAGATGGAGAGATCGCGCGGTACTGTCAACATCCCTTGGTGCGGCGGTACTGgagccttcttcttcttctgccgCTGATCTTTGCTTGTCTGACTGCTCTTGGAGTACTTCTTCTGGTGAACAAATTCAGATGGTCTTTAAGCAAAtgggacagaaaatgtcattctCAAGATATGAGGGGACAGGTGTTGTTGCTCCATTCCTCAGCCATGGACCCACAGGTGGTGTGTAAGTTGGGCCAGTTGTTTTCTGAGCTGGGATTCAGAGTATTTCTGGACCTGTGGAACCAAACAGAGCTCGGTTCTTGCGGTCCGGCTGCGTGGCTCCACTCTAAGCTCGATCAGATCCAGAAGCATGGAGGCAAGGCCCTTGTGGTGCTTTCTCCAACAATACTGCAGAGAGCCGAGTTGTTTTGGGAAATTGCCGTGGAAAGACAAAGCAATCCCGCCGTATACTCCTCGGATATGCTGGCTTCGGCACTGGGCTGCATTTTCGCTGACCGTCAGAAGGTCTGCGCTGCTCAGCGGTTCATCCTTGTGCAGTTAGACGTTCACAAACTTCCCATTAATAAGGAGCATGACATGCCTAAGCTGTTGAGGGGCCTGCCGCTTTATAAGCTGCCCTCGCAGTCTCAGGGATTACTTGCGGAACTGTGCGAGGAGAGCCCAAATATGATGAGTTGGAAGTTTAAGAAGATGTGGTGGATGAAAACGGCACAGAGGAAGCTGGCCCAAGGAGTGCAGAGCATTTTTAAGTCGAGAGTGAGGACTGAATCCGTGCTCACGCAATTTGATTCACTCAGCCTAGACAATGAAGACACAGAGGAAAggatatttattcaaaatgaccAGCACTGATGTGTCACACCAGAACATTTGTTTGGATCAGCGGTCACAGTCTGTCAGTATGGACTATGGACAGATGacataaacaataaaagtaCCAGAAGCTCCAAGACCGTGGTGAAGTACCTTTGAATACTATGTGAATGTGGCATAATACAGACGTTTTTACAGTAAGTGGCTAAAGGAATAGCTTTAGAAGGAAGTCTGCTTGTGGGGCTAACAAGTCTAAATGAGGGAATTCCACAGCACAGACGCTACAGGAAGTAAAGAAATTGATACACTACAAATACTTCAGATATTCATGCTGTTTATGTCTAGCCAATGTACTCCTATGTTTTTATAGGTAGCCTGTTTGGAAGGAAATTTACTCTTACTCACCGTTTTAAtctctgcttttatttaatggtTGTAAATAATGGCTTTTGGCacatatctatataaatatcgctttgtgcatattttatatatgcatgtaatatattttaattgaactttTGTAATATACAGTACGTTTGATGTTctcaaatatattttgacaCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118296 lncRNA downstream 3062 8203395 ~ 8204235 (-) True G79968
TU118280 lncRNA downstream 6084 8196472 ~ 8201213 (-) True LOC122354197
TU118293 lncRNA downstream 16209 8185333 ~ 8191088 (-) True G79965
TU118269 lncRNA downstream 56463 8097344 ~ 8150834 (-) True G79948
TU118266 lncRNA downstream 56463 8099151 ~ 8150834 (-) False G79948
TU118297 lncRNA upstream 857 8217743 ~ 8218050 (-) True G79969
TU118298 lncRNA upstream 1228 8218114 ~ 8218422 (-) True G79970
TU118300 lncRNA upstream 1874 8218760 ~ 8226002 (-) True G79971
TU118301 lncRNA upstream 1874 8218760 ~ 8226002 (-) False G79971
XR_006252076.1 lncRNA upstream 228364 8445250 ~ 8450614 (-) True LOC122353969
XM_043252314.1 mRNA downstream 456 8199349 ~ 8206841 (-) False LOC122354197
XM_043252313.1 mRNA downstream 457 8199349 ~ 8206840 (-) False LOC122354197
XM_043252315.1 mRNA downstream 729 8199349 ~ 8206568 (-) False LOC122354197
XM_043252842.1 mRNA downstream 139836 8060790 ~ 8067461 (-) True hp1bp3
XM_043252954.1 mRNA downstream 147238 8054967 ~ 8060059 (-) True sh2d5
XM_043251536.1 mRNA upstream 14387 8231273 ~ 8233269 (-) True LOC122353662
XM_043251626.1 mRNA upstream 17902 8234788 ~ 8245729 (-) True LOC122353737
XM_043252537.1 mRNA upstream 29051 8245937 ~ 8269376 (-) True LOC122354372
XM_043251619.1 mRNA upstream 53308 8270194 ~ 8292985 (-) False wnk2
XM_043251621.1 mRNA upstream 53308 8270194 ~ 8292984 (-) False wnk2
TU118295 other downstream 10912 8195818 ~ 8196385 (-) True G79967
TU118263 other downstream 63677 8092400 ~ 8143620 (-) True G79947
TU118247 other downstream 171764 8028606 ~ 8035533 (-) False snrpe
TU118246 other downstream 171764 8033930 ~ 8035533 (-) True snrpe
XR_006252105.1 other downstream 770826 7374354 ~ 7436471 (-) False LOC122354401
TU118535 other upstream 279302 8496188 ~ 8497285 (-) False LOC122353694
XR_006252128.1 other upstream 291773 8508659 ~ 8520020 (-) False LOC122354572
XR_006252127.1 other upstream 291773 8508659 ~ 8520020 (-) False LOC122354572
XR_006252126.1 other upstream 291773 8508659 ~ 8520020 (-) True LOC122354572
XR_006252130.1 other upstream 316596 8533482 ~ 8538544 (-) False LOC122354573

Expression Profile