RNA id: XM_043252537.1


Basic Information

Item Value
RNA id XM_043252537.1
length 5444
RNA type mRNA
GC content 0.45
exon number 49
gene id LOC122354372
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8245937 ~ 8269376 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gTTGCTTTAGGCTACATGTTTATCACCATGGACGAAGTTGCAATGAGACCAACTGTCTTTTTCCTTCTGTTCACCTTTGTCAACTTGGCTGCAACAAGCAAGAACCAAGGTATAGATATCTACAGCTTCCACATTAACTCTACAGTCACTAGCCGCTATGCTTCTACAATCATCACAAGCCGTGTGACGAACGTGTTAAATCAGCCTCAAGAGGTCAATTTTGAAGTCAAGATTCCCAAGGATGCCTTCATCAGCCAGTTTAGAATGACCATAGAAGGGAAGACATATGATGGGGTTgtgaaggaaaaagaagaagctCAGCAGCAATACAGTCAAGCGGTATCTCGAGGACAAAGTGCTGGACTGGTCAGTGCTGTCGGCAGGACTTTAGAGGACTTTAAAACCTCAGTGACAGTAGCTGCTTTTAGTAAAGTGACCTTTGAGTTGACCTACGAGGAACTGTTAAAGCGTCGCCTCGGCAAATATGAGCTACTCATCAACGCCCAACCGATGCAGCCAGTGGCTGACTTCAagATTGACATACACATCCATGAGAATCCAGGAATTTCCTTCTTGGAGGTCAAAGGTGGTCTGAACACTAAGGATCTGATCAATGCAGTCACAACCATCAAAGCAGACAAAGATGTATGGGTGAAGTTTTACCCCACTCGTGATCAGCAAACAAAGTGTGATGACTGTAGTAAAAAGGGCCTTAATGGCAACCTGATCATTATGTATGATGTtgagagacaaaaacaaagtgGAGATTTGATGGTATTAGATGGTTACTTCGTCCACAACTTTGCACCAACAGATATTCAGCGCATTCCCAAAAATGTGGTGTTTATCATTGATGAAAGTGGCTCCATGTCAGGCAAAAAAATTGAGCAGACACGTTTGGCTATGCTGAGGATTTTGAGTGACCTTGCAGAGGATGACCACTTTGGATTGATTACATTCAACGGTGACATTACAACCTGGAAACCTGAACTCCTGAAAGCAACTGAAGCAAATGTGGAAGGAGCGAAGACGTTTGTGAGGAGAATTACGAGTGGAGGATCCACAGACATAAATGCTGCAGTGCTAAAAGCTGTGGACATGATTAACAAATACTCACAAAAGGAATCTGCATCCATCCTAATCCTGTTGACCGATGGAGACCCCACTAAAGgTGAGACTAACCCAGAGAACattcagaaaaatgtgaaaacggCTATTGGTGGAAAATTCCCCTTGTACAATTTGGGATTTGGGTTTGATGTCAGCTTTGAGTTCCTGAAGAAATTGTCTTTGGAGAATAACGGCGTTGCTCGCAGGATCTATGAGGATGATGATGCAGATCGACAGCTGCAGGGCTTCTATGAGGAAGTGGCCATCCCGCTCTTGACAGATGTCCAGCTTAACTACCAAGGGGTGGCCAATTTAACCCAGTCCACTTTCAGCCAGTACTACAATGGTTCAGAGATTGTGGTTGCTGGTCAAATTACTGATAACAGTCTGGAAAGTTTCACcactgaggtcattgcattaTCGAAAAACACTAAGGTGGTATATCACAGCAGTGTACCTACAGTGGACCTTAGTAGTGGCATACCTGAACAGGAGAATTTCATTAAAAGATTATGGGCCTTTCTTACAGTGAAGCAGCTGCTGGAGAAAATggTTCTTCTAAAAGGCTTGGAAAAAGACAGCGCAAAGAAAGATGCCCTTGACCTTTCCCTGAAGTACCAATTTGTCACACCTCTTACATCGATGCTGGTCACCAAGCCTCAGGATGAGGAGATGCAAGTGGCCCACAAACCCGAGGAGGGAGAGAAAGCAACAAGGCATTCATCTGGAGCTTCTAAAATATcAACAAGACAAATGTCCAGGTCCAGTCATCTTGCAGATAATATGCTTCTTGCCTCCGGCAGTGTAGGGCAATATGATTCCCACAGACCAATGAGACGAAAAAGACCCCCAAAGCAGCCCCGCATGCACTTGATGAAAgCCATGTCACCGTTACCGTTACCTAGAACAACCTCTCTTCCATtgaggaGCATTAGGATCTTGAAATCTTCTGGTAATGCTAAGCCACTTTGTTATGATGTTCCTTTTGCTCAGAAAGTCAGGCTCCAACAGAATGTCCTATCAGAGTTCTCGATGAATGGGCAACTTGACTCATTTGGAGGAGAAGGCTTCAGTCAAATCTCAATTCATTACAAAACTAGTCACCACCTGCTGCTCAGCACGAATGAAATTACCTACAACGATAGGCAGGAAATTTTGAAGTTTTCATGGGAGCAAAATCTCACCCACGATGAGATAGAAGACGTGTCTCTGATTCTACGGAGCAACGAATTTGATATTACCATGGGAAACATCCGGGTTGCTATACTTCTTCATAAGAAAGATGGTGCCATTTTTCTGTGGCCTGCCATTTGGCAACAACCAAGAGATGTCGCTTTGATGGGAATTTTAGgaGAGGCTGGTATTTCATATGATGAGATCCCAGGATCACAAACACCAACTTTAAGGATAAAGGACAAGGAAGTGAAGACATCTTGGGTGATGGTGAAGGACTACAGGCTCGCTTCTGCTCCTGTGGTTGGATGTTGGCTTGTACCTTTCCAGGATCTCACCCAGCAGCAGCTCTCTGACTTCACCGTCACTCAGCTGTTTCAGTTTACTCTGCAGGTCATGATGGATCGAGCAGCTCTCCGGCTGATTTTCTTGGGTGTCTTCCTCATCTTAGCTACTTCAGATCCTGTTAAGAAGaaacaaaatgtgGATATATACAGCTTCTACATTAACTCCACGGTCACCAGCCGCTACGCCACAACAGTCATCACAAGCCGTGTTGCGAACAAATTGAATGAATCTCAAGAGATCCAGTTTGAGGTCAAGATTCCCAAGAATGCCTTCATCAGCAAATTCAGAATGACCATAGAGGGAAAAACATATGATGGTgttgtgaaagaaaaagaggcaGCTCAGCAGCAATACAGTCAAGCAGTATCTCGAGGACAAAGTGCTGGACTGATCAAatcaGTTGGAAGGAATTTAGAGGACTTTAAAACCTCAGTGACAGTAGCTGCTTTTAGTAAAGTGACCTTTGAGTTGACCTACGAGGAACTGTTAAAGCGTCGCCTCGGCAAATATGAGCTACTCATCAACGCCCAACCGATGCAGCCAGTGGCTGACTTCAAGATGGAAGTGCACATCCAAGAGAAGCCAGGAATCTCCTTCTTGGAGGTGAAAGGAGATTTGAGCACCGGTGATCTGGCCGATGCCATCAAAACCACCAGAGCAGACAAAGACGCATGGTTGACCTTCTATCCTTCTCGAGATCAACAGACCAAGTGTAAAAGCTGTGGAGAAAATGGGTTGAGTGGTGACCTGCTCATATCATACGATGTTGAGAGACAAAATCCTAAAGGAGAAGTCatgGTATCAAATGGCTATTTCGTCCACTACTTTGCCCCCTCTGATGTTCAACGTATTCCAAAAAATGTGGTGTTTATCATCGACCGGAGTGGTTCTATGCATGGTAGAAAAATAGATCAGACTCGTTTGGCACTGCTGAGGATTTTAAGTGATCTTGATGAGGATGACCACTTTGGATTGATCACCTTTGACAGTGAAGTTAGCTTATGGAAGCGTGAGCTCCTCAGAGCTACTGAGGAAAATCTAGAGAATGCCAAATCTTTTGTGAAGGAGATCAGAGATAGAGGAGCCACGGACATAAACGCAGCAGTTCTAGCAGGAGTGGATATGATCAGTCGACATCCACGAGAGGGAACAGCCTCCATCCTGATCCTGCTGACCGATGGAGATCCCACTTCAGGTGAAACCAACAAAGAGAAGATAATGGCGAATGTGAAAGAGGCCATTGGGACAAAGTTTCCCCTCTATTGCCTTGGTTTTGGATATGATGTTAACTTTGACTTCCTGACAACGATGTCTCTGGAAAATAGTGGAGTTGCTCGCAGGATTTATGAAGATTCAGACGCTGATCTACAGCTTCAGgGCTTCTATGAAGAAGTTGCCGTCCCTCTTCTCACTGAAATTCAACTTAAATACCCAGGAGGTACAAACCTTACCAAGACCAGCTTTAGCTTGTACTTCAATGGCTCTGAGATTGTGGTGTCAGGACAAATCACAGACAACAGTGTGGAGAGTTTCACCACCGAAGTCATCGCAGTATCAAAAGGCAGCAATGTGACGTATCAAGACACTATAATGACAAAAGAGCCCAGTGATGTTCCACCTGAGGATGAAGATTTCATGCAGAGGTTGTGGGCCTACCTTACAGTGAAACAGCTTCTGGAGAGACAGGTGCTTCTTAAAGGACAGGAGAAAGAGGACGAAAAGAAAGAAGCTCTCAGACTTTCTCTGAAATATCAGTTTGTCACTCCCCTCACCTCTATGGTCGTTACTAAGCCACAGGAAGGAGACGTGGAAGTAGCCGACAAACCCAAAGAGGGAGAAGCGCCGCACAGACCTCCAGTACCTGTACCTTTTCATCCTTTTGCATCACCAGGATTTAGTCAGCACCACTTTAGAGGTCAGCCTGGTCTACCCGGTCCACCCGGTCCACCCGGTCAACCTGAACGAGGATATGCTGGTCATCCAGGGATCCGTGgtggaCGATATCGCGGTAATATGCGACCTCGATTTCCCCACTTACAAGTAGATGAGGGAGATGCTGCTCCAGGATTAATCTTTGACTCGCGCTCACATCCAGTGATTGAATCTGCTGTTACTATGGCAGATGTCAGGCCAGCAGCTGGGAGGATGTTACCTGTTCCTTCTATAGTCTCAGTTCGTAGCAATCGTTTCCTGCTGCCTGTTGTTGGTCAGTCTAAGCCACTCTGTTTTGACGTTCCTGTTCCTCACAAACTCAGACTTCTACAGCATTCAGCTTCAgAGTTCTCTATGAATGGAGAATCCACAACTGGACAAAACGGATTCCATCAAATTGCCTTACATTACAACACGAACCATCATCTGACAATAAACACAACATCTATCAGATACCACGATGGCCAGACTCTAGTTGAGTTCTTATGGGGCCAGGAACCGACCCAACACATTACTGAGGGCGTGTCTCTGATTCTACGGAGCAAAGAAATAGATATCACCATGGGAAATATACGCGTTGTTATTcttattcatgaaaaaaaaagggatgCGTTTCTGTGGCCTGCTGTTCGACAACAGCCAaaagatgtcagttttacagGCATTTTAGGAGAGCCTGATATTTCATATGACGAAATCCAAGGAACACAAACACCAGCTTTAAAGTTAAAGGACCAAGAAGTGAAGACATCTTGGGTGATGGTGAAGGACTACAGGCTCGCTTCTGCTCCTGTGGTTGGATGTTGGCTTGTACCTTTCCAGGATCTCACCCAGCAGCAGCTCTCTGACTTCACCGTCACTCAGCTGTAGAgttcagcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118300 lncRNA downstream 19935 8218760 ~ 8226002 (-) True G79971
TU118301 lncRNA downstream 19935 8218760 ~ 8226002 (-) False G79971
TU118298 lncRNA downstream 27515 8218114 ~ 8218422 (-) True G79970
TU118297 lncRNA downstream 27887 8217743 ~ 8218050 (-) True G79969
TU118296 lncRNA downstream 41702 8203395 ~ 8204235 (-) True G79968
XR_006252076.1 lncRNA upstream 175874 8445250 ~ 8450614 (-) True LOC122353969
TU118540 lncRNA upstream 239271 8508647 ~ 8535713 (-) True G80130
TU118559 lncRNA upstream 284040 8553416 ~ 8667800 (-) True LOC122353980
TU118584 lncRNA upstream 319713 8589089 ~ 8591007 (-) True G80144
TU118602 lncRNA upstream 397071 8666447 ~ 8676813 (-) True G80158
XM_043251626.1 mRNA downstream 208 8234788 ~ 8245729 (-) True LOC122353737
XM_043251536.1 mRNA downstream 12668 8231273 ~ 8233269 (-) True LOC122353662
XM_043251962.1 mRNA downstream 29051 8207297 ~ 8216886 (-) False il17rc
XM_043251961.1 mRNA downstream 29054 8207297 ~ 8216883 (-) True il17rc
XM_043252313.1 mRNA downstream 39097 8199349 ~ 8206840 (-) False LOC122354197
XM_043251619.1 mRNA upstream 818 8270194 ~ 8292985 (-) False wnk2
XM_043251621.1 mRNA upstream 818 8270194 ~ 8292984 (-) False wnk2
XM_043251622.1 mRNA upstream 818 8270194 ~ 8292984 (-) False wnk2
XM_043251620.1 mRNA upstream 818 8270194 ~ 8292984 (-) False wnk2
XM_043251617.1 mRNA upstream 818 8270194 ~ 8292984 (-) True wnk2
TU118295 other downstream 49552 8195818 ~ 8196385 (-) True G79967
TU118263 other downstream 102317 8092400 ~ 8143620 (-) True G79947
TU118247 other downstream 210404 8028606 ~ 8035533 (-) False snrpe
TU118246 other downstream 210404 8033930 ~ 8035533 (-) True snrpe
XR_006252105.1 other downstream 809466 7374354 ~ 7436471 (-) False LOC122354401
TU118535 other upstream 226812 8496188 ~ 8497285 (-) False LOC122353694
XR_006252128.1 other upstream 239283 8508659 ~ 8520020 (-) False LOC122354572
XR_006252127.1 other upstream 239283 8508659 ~ 8520020 (-) False LOC122354572
XR_006252126.1 other upstream 239283 8508659 ~ 8520020 (-) True LOC122354572
XR_006252130.1 other upstream 264106 8533482 ~ 8538544 (-) False LOC122354573

Expression Profile