RNA id: TU118540


Basic Information

Item Value
RNA id TU118540
length 2200
lncRNA type read_through
GC content 0.32
exon number 7
gene id G80130
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8508647 ~ 8535713 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatctatctatctatctatctatctatctatctatagattataatttattattaattacattattttagattatatgtaaatatttaatatataaaaataaaattaggatAAAATTTTCCatgaaatttaattacattttcctaCTAAAATCGAATTAGTTTGAAATGATTGTTGTAATCTTGTTGCATAAACTTAAATTCcgtttaacagaaaaaaacatttggtcaTTCCTAACAGATAACGTTTTGCCATGCATTATAGAAAAGATTTTGTCAGCttaactacaattttttttactttataaaataatgcCTTGTTTACTACATTCAATTTAGTCATACTCTTTCTAACAAAGCAATGTCAACTACATACATTTGTCCTACCTACTAGATAAAATGTTAATCCTTATACTTTTAGCTAACTTGACACTAcagttaattataaataaaaaagtggaaTACTTGTGTTCTATTAAATGATAACCTTTTTAATGTATATCTTTAGTCCAGTGGTTCAGGGGCCTCCAGGAACGTCGtgggaaccactgctttagTCTACTGTGAAGAAAAAGTCAATAAGATAAAGtcaatacattttgtaacaatctgtattttatatttattatcttcTTGCTTACATCTGCAAATATGGCAATTAAAGATGCTCTCTTAGTTCAAACCAGTATGTGACATAtggtatttcatttatatttaggtGGCCTGAACCTTCAACAGTCTTACTTTGCTTTAAAGTTTGCCAATGATATAAAGTGAAACTCGTAATGCTGATTAATTGTCTCTGCAGTTTCACCATCAACCATCACTGAACAAACTACAACTACCATGATAACCTCCTCCTCCGCTCCGCCTGACTCAACCAGAAAGACTCAAACATCCTCTTCCGCTCCGTCTGTCTCAACCAGAGAGACTCAAACATCTGTTCCTCACACTGGTCACACTCACTCTGAAGACTCACGGCTTCATTTCTGTCTGCACTCATAGGATTCATCTCTCTGTGCCTCTTTACCAGTTCTGACGTCTCCTACCAGCTGGAAACAACATCGCTTTAATGTTCTCTCTGTGCTCCTCGAAACATGGATGACTTGTTTACTTTCTTCACTTTTAACATCTCTGTCACTGATCTGTACATGTAGCTACAGCAAGAATTATATCATAGTGTTTAGTACAGTATTTAGCtactaaattttttttaatctgaataaTAGTAGCTGTATGTAATCAGCACATgcatactaataataataaagatgttggtgataacaataatattttgtgatgaGGGCAAcaatattatcaataataataaaagttatagTAATAATAAGGTAATAATGACTCATAGAGTTTAGCATAGaagttttgtaatattgtatttatttctcgTGGAGAGTCTGTAGGCTTACCTTCCCTgagtcatttttttctgtttcttttgattaatttgattGTTTACTGGATTTTTTGTGATGATATGTTTCATGACGGACAGAACCTGATTTTGTTCGAGttcatgttcctggatcaatcTTTGTTGGCCATGGAACAACACTGAGATTAACCAGAAGGAGATTTAAAGAAGAGGTTTATAGTCTTTGTGAAGTTTAGACTTACAATCGATGTTTGGTGCTACATCAGtgtcattaaatctgattttaggcataaGATTAGGTTTAAGTGTAGAGTTATGgtcaaaacaaaagttttggattaaaatgttgtataagggtcaacaaaatatgttatttattcctaGAGTGTCCTCTCTGTGTGAAGATACCTGTCAAACTCTGTCTCTTTAAGGAGAGATATGTTAAAGCTTCATCTACTGGTGTGTTTATGTAAATTAGCTGGATTCTGTATGAGTTATTGGAGCGTGGACACTGTTGATGGGTGGATTTTATATTCAGAGATATTTGATTGAGTTCCTGGTATATTGCAGTAGTTGTATTATgaaaatttttttgttgttttttttttgcttatcaAGATACATATTCCTCTGTTGAATAATAAATGGCTGAATATGATTGAGTGAACTTTGCTGATAATCAAATACTTATCATATGCTGATAAGCATTGCAGTATACTCTATTATTTCTCGTTTTGTAATGGATGGTAATCAAACTGGCAGACTAACATCTGTgaaggtttttaaataaatcgaATGCGTTTAATAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252076.1 lncRNA downstream 58033 8445250 ~ 8450614 (-) True LOC122353969
TU118300 lncRNA downstream 282645 8218760 ~ 8226002 (-) True G79971
TU118301 lncRNA downstream 282645 8218760 ~ 8226002 (-) False G79971
TU118298 lncRNA downstream 290225 8218114 ~ 8218422 (-) True G79970
TU118297 lncRNA downstream 290597 8217743 ~ 8218050 (-) True G79969
TU118559 lncRNA upstream 17703 8553416 ~ 8667800 (-) True LOC122353980
TU118584 lncRNA upstream 53376 8589089 ~ 8591007 (-) True G80144
TU118602 lncRNA upstream 130734 8666447 ~ 8676813 (-) True G80158
XR_006252082.1 lncRNA upstream 133543 8669256 ~ 8683250 (-) True LOC122353992
XR_006252081.1 lncRNA upstream 134420 8670133 ~ 8675735 (-) True LOC122353991
XM_043251568.1 mRNA downstream 5281 8499207 ~ 8503366 (-) True LOC122353695
XM_043251569.1 mRNA downstream 5281 8499303 ~ 8503366 (-) False LOC122353695
XM_043251567.1 mRNA downstream 11362 8491771 ~ 8497285 (-) True LOC122353694
XM_043251899.1 mRNA downstream 63751 8435583 ~ 8444896 (-) False parapinopsinb
XM_043251898.1 mRNA downstream 68037 8435583 ~ 8440610 (-) True parapinopsinb
XM_043251927.1 mRNA upstream 8739 8544452 ~ 8550560 (-) True LOC122353982
XM_043251926.1 mRNA upstream 8739 8544452 ~ 8550556 (-) False LOC122353982
XM_043251925.1 mRNA upstream 18626 8554339 ~ 8569366 (-) False LOC122353980
XM_043251930.1 mRNA upstream 43524 8579237 ~ 8588988 (-) True LOC122353983
XM_043251928.1 mRNA upstream 43524 8579237 ~ 8583575 (-) False LOC122353983
TU118535 other downstream 11362 8496188 ~ 8497285 (-) False LOC122353694
TU118295 other downstream 312262 8195818 ~ 8196385 (-) True G79967
TU118263 other downstream 365027 8092400 ~ 8143620 (-) True G79947
TU118247 other downstream 473114 8028606 ~ 8035533 (-) False snrpe
TU118246 other downstream 473114 8033930 ~ 8035533 (-) True snrpe
TU118561 other upstream 17703 8553416 ~ 8666340 (-) False LOC122353980
TU118567 other upstream 17703 8553416 ~ 8666340 (-) False LOC122353980
TU118562 other upstream 25871 8561584 ~ 8667800 (-) False LOC122353980
XR_006252079.1 other upstream 160737 8696450 ~ 8700757 (-) False LOC122353984
XR_006252078.1 other upstream 161451 8697164 ~ 8700757 (-) False LOC122353984

Expression Profile