RNA id: XM_043251898.1


Basic Information

Item Value
RNA id XM_043251898.1
length 3068
RNA type mRNA
GC content 0.42
exon number 4
gene id parapinopsinb
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8435583 ~ 8444896 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGTCATACTGTACTACTGCAGTgctctatcatctatctatctatgcacACGCATGCATATTgaaaagtgtgtttctgtgcaaaAAATCAATACTTATACAGAGCAAAGGAGACTTTCAAAAGCATCTTCAGTTTGTCctgtattatgtaaattaaaacgGTTAAAATTAACCACCATCAACTTTGGTGTAAGATACTAAAAGCACGTCTATTTTACCTTAACCTTAACTTACAGTACATCCAGCGGAGCTATAGACGCACATCCAGAAATAGAAGTCTTTATTCACTGGTGACCCGGTGGCCCTTCTTAAATCAAAtgacaaagacaacaaaaagaTTAAGCAATGATGGGTCTTTCGGGGACAGAAGCAATAGTTTTAACAACTCGTGAAGCAAATCCGGTTAGTCTATGCTGGAGTTCACTCTCGTCTATTTTAATGCGAGGCACTAAACACACAGTAATCTGTGTCTCATCTTAATGGAAGTTAAAGCTCTTAGCGGGTCAAATATAGTACTGGGCATATGTGACATTTAGCACTGAAGGTGCTGAGAGTCACTCTTCAGCTGATCACAGAATCTCTTACAATCTCTCATAATAAACACAGGCACTCACAAGCATTTATGAATGGAGACTGATTCCAGATCAAATGATTTAACTTTAACGCATTGACGCAAAGTGAAATGATGTCAATTAGACCGCTTTTGCTTTTCAGCGCCACGgcttgaaaatataaaaattcaatgCAAACTTTTGAAGCTGAGAGAAagtggtcatttttgagcaatTTTTGATCGTGGCATGCACTTGCTGTGTACAAAAGATATACAGAAGTGTACAGCCTCtggcagaaaaaagaaaattgagtaaacatttaaactaaGTAAAGTCAAAAATACAGGTTATTTTATTGATGTTATTTATCTATTACATGACAATTGGCGAAGAAAAATGTGCGTAGATCACTGGTTTggaataattatgttttaacaattttatgtccttaatgttcaccaaggctgcatttatttgataaaatatttaaaaacactaatatcatgtagtattattaaaatgtcaaataacagTCCaccattaaatttattttggacTATTTCTTCCAGATCAAATAatgcttcaaaaatcattcGAACATGTTCTTTTCCTGCTCAAGAAGACCAGTTCTAATAAACTGTAACAAAATTGCActgttactgttttattgtattttctaaTAAATGAGTTCAGTTTTGGTGAGCAtgagatttctttaaaaaaaaaaacgtaattattCTGAACTTGACTTCAAGTCATTCTTCTGCAATTAAGGGAAGAGCTGGATCAGAGATCACACCCGGGGGGACTTATTGTGTCTTAAGTCTGGATCTTTGGGACTTTTCTTCTTACAGCACCTAATCTGAATAAGAACACCGTGTTTTGTGCGTCGCCGACTTGAAGGTGCATGTCTGAAGAACTCGAGCGGCACGGCAGAGAAGAATATAGCTTGAATCTGCTTGGAAAACTaccaaaactagaaaacacgAAACAGTTTAGAcggacagattttttttttatacatctgTATTTTCAGTTATCACTCGAGGGGATGGGCTCTTTCCCAGAATTCCTGAATGACTCGTCTATCCACGATGGCCCTGGCGCAAAGGTGCCCCTGCCTTGGGCAGGATTCATCACGCTGTCCCTCCTCATGGCCGTGTTCTCCATCACAGCTGTCGTGTTGAACGCTACAGTGATAGTCGTCACCCTGCGGCACAAACAGCTGCGGCAACCGCTGAATTTTGCCCTGGTCAACCTCGCCGTGGCCGACCTGGGCATCACATTAACAGGAAGTGTGCCATCTGTGGTGACCAATGCTTTGGGCTACTACATTATGGGACGGGTCGGATGTGTATTGGAGGGGTTTTGCGTTGCATTATTTGGTATAACAGCTCTGTGCACAGTGGCCCTGATTGCTGTGGAACGGCTTTTTGTAGTGTGCAAGCCTCTGGGTACCATCAAATTCCAGACCAAGCACGCCGCAGGGGGGCTGTTGTTATCCTGGCTCTGGTCTCTGGTCTGGAATAGCCCGCCTCTCTTTGGCTGGGGGAGCTACCAGCTGGAGGGAGCAGGCACATCCTGCGGACCCGACTGGCAGAATCGAGATCGCAAGAATGTGTCTTACATCATCTGTTACTTCTCCCTCTGTTTCGCCGTGCCATTCCTCATCATTGTGGTGTCTTATTCATGGCTGCTCTACACGCTTAGAAAAGTAGCTAAGGTAGGAGGTCGTGTGGCGGCGAGGGCCGAGTCTAAGGTGGCGTGgatggtggtgatgatggtgTTGGCCTTCCTCGTGAGCTGGCTGCCGTATGCCGCTCTGGCTCTGACGGTGGTCATCAACCCCGATGTCCAGCTGGCCGTCACGGTGAAGGTGGTACCCATTTACATGGCCAAGAGCAGCACCGTATACAACCCCCTGATCTACATATACATGAACAAACAGTTCCAGAAGTATGCAGTACCATTTCTGATGTGTGGAAGGGATCCCTGGCCTTCAGAGGACGATGCATCTGATCTTCAAACCGTCGTGTCACCGATGAACAACAAAATCAACCCAGAGTGATTGCTGTGTGTTTCACTACGGTCATGTTAGAGCACGGCGAACGTGCCTTTCTGCTGAAAGTGAGACGGTTTGACGGACGCgatttctttttgcttttgaagCGTGGCCCTTTCAAGGCCAACAGCCTTTCGTTCACATCACAGCTGTTTCACCGCTTGCTAAAACTGTTCAGAAACGAGCTGGATTCGAGAGAGAGGTATGCTACGCAGCATATgtatgaaaatatgtaaatgttactGAATGAAggaccacttttttttttttttcttacaagtaaaaaagaaaagcacattttacGCTCTTGTCAAACTTTAGATAGcttgtactgtactgtatttataatgcagataaatgtaaactttgctaatacttttatattctatatacaaactgatcaaaagtgacggtAGCGACACCAAATATGGTATTTCCTGGAAATTAGTACAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118300 lncRNA downstream 209581 8218760 ~ 8226002 (-) True G79971
TU118301 lncRNA downstream 209581 8218760 ~ 8226002 (-) False G79971
TU118298 lncRNA downstream 217161 8218114 ~ 8218422 (-) True G79970
TU118297 lncRNA downstream 217533 8217743 ~ 8218050 (-) True G79969
TU118296 lncRNA downstream 231348 8203395 ~ 8204235 (-) True G79968
XR_006252076.1 lncRNA upstream 4640 8445250 ~ 8450614 (-) True LOC122353969
TU118540 lncRNA upstream 68037 8508647 ~ 8535713 (-) True G80130
TU118559 lncRNA upstream 112806 8553416 ~ 8667800 (-) True LOC122353980
TU118584 lncRNA upstream 148479 8589089 ~ 8591007 (-) True G80144
TU118602 lncRNA upstream 225837 8666447 ~ 8676813 (-) True G80158
XM_043252727.1 mRNA downstream 94798 8323592 ~ 8340785 (-) True tkta
XM_043251624.1 mRNA downstream 116694 8306278 ~ 8318889 (-) True bicd2
XM_043251625.1 mRNA downstream 116695 8306278 ~ 8318888 (-) False bicd2
XM_043251627.1 mRNA downstream 130084 8302109 ~ 8305499 (-) True card19
XM_043251567.1 mRNA upstream 51161 8491771 ~ 8497285 (-) True LOC122353694
XM_043251568.1 mRNA upstream 58597 8499207 ~ 8503366 (-) True LOC122353695
XM_043251569.1 mRNA upstream 58693 8499303 ~ 8503366 (-) False LOC122353695
XM_043252811.1 mRNA upstream 68049 8508659 ~ 8520020 (-) False LOC122354572
XM_043252810.1 mRNA upstream 68049 8508659 ~ 8520020 (-) False LOC122354572
TU118295 other downstream 239198 8195818 ~ 8196385 (-) True G79967
TU118263 other downstream 291963 8092400 ~ 8143620 (-) True G79947
TU118247 other downstream 400050 8028606 ~ 8035533 (-) False snrpe
TU118246 other downstream 400050 8033930 ~ 8035533 (-) True snrpe
XR_006252105.1 other downstream 999112 7374354 ~ 7436471 (-) False LOC122354401
TU118535 other upstream 55578 8496188 ~ 8497285 (-) False LOC122353694
XR_006252128.1 other upstream 68049 8508659 ~ 8520020 (-) False LOC122354572
XR_006252127.1 other upstream 68049 8508659 ~ 8520020 (-) False LOC122354572
XR_006252126.1 other upstream 68049 8508659 ~ 8520020 (-) True LOC122354572
XR_006252130.1 other upstream 92872 8533482 ~ 8538544 (-) False LOC122354573

Expression Profile