RNA id: XM_043251567.1


Basic Information

Item Value
RNA id XM_043251567.1
length 1627
RNA type mRNA
GC content 0.42
exon number 13
gene id LOC122353694
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8491771 ~ 8497285 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTCCTGTCGTCTGATGTACTACTTCCTAATTCTCCTATTGTGTGAGTATCGTCTTTGTTCTCCTTCTAGCGGAAATGAAGTTGTTCACCTTCGTTGTTTTGCATCTTCTGATGGATGTTCAGTCTCAAAaATCTCCTGCTGTAAAAGTATCTCCAGATGTCATAAGAGAGTCCAGCACAGTGAAGATCATCTGTGAGACATCAGAACGTGTGGATCAGTGTTATTTCTACACAAAAAGACAAGAGAAGATTATAAAAGTCCCTTCATCGTGTGAGCTGGATCTCACTGGTGCTGAAGTGCTCAGATGGGCAGCTGTGAAATCACCTGAGTCAATAGACATTTACTGTTACTTTACAATAGAAAACCACGGCATCAACAAACCATCATCTCATTCTACTCCTGCTACTGTGACTGTGTTGGATTCACTTCAGAAACCCTTCATTAGTGTTAATGAAGATCAGGACATTATATCATGTGAAATACCCCTCTCAGTCGAAGCTGATTTCATCTGTAGCTTCTACACTGAAGATGGTGGTCTTCTGTGTCAGCGTGTCTCTCAGAGGAGTTCGTCTGGAGAGAAAAGTCACTGTATGTATTACTTAAGTCAAAGTGAACTCTTCACACGATCAGTGAACAGGAGACGGCTGAGCTGTGTTTATTCACCCAAGACTGAACCTGAGATCAGATCCCCACACAGTGACACGATCACCTTGAAAGGTCTTCCTCTGGCCAGGTTGTCAGCATCTGCTTCAGTTATTCTGGAAACAGACACAGTTCAGCTGAGTTGTGAGAATACTGAAGATCTGAAGATGAATACGTGTTACTTTTACataaatgaaagacaaaataactcaaaaccgAGCTCATCATGTAAGCTTTCACTCACTGGATCTCAGATCAGTATTTGGTCGGGAGGTCAGAGCTCATCTGTGAGAATAATCTGCTTCTACACTGTGATGAACAAACCGTCTCTTCATTCTGATCCAGTGACAGTCCAAaTTTCAACATCAACCTCAACTGAACAAACTACTACAACAGCCATGAAAACCTCTTTACCTGTAACCTCCACTTGTGAAACCACAACATACAGTAAATCTTATGTAGATGTAGTCTCTAGTGTTCCTGCGGCTCATACTGAAGGTCCACCCACACTACAATACAAAGATATGTTGTGGTATATGCTGGTCTCCACTGGTCTTTCTGTAATTTTGTCTGGACTCATGGGACTCATCTGTCTGTGCTGGTTTGCATgtaaaagaagaagaaacaataaaacGAGAGCAACCAAAGCCGATGTGTCCGGTCAAGAAACTGGAATGAGTTGTTCTGGACCTGCAGAGATATATTCTCTGATCACTTCTGTGCCAGCCACATGCCAGCCCATATCTGCCGATGTTTTGGTTAATAAACAACAGGAACAGGGAAACCTGGAGGAAAACGAGAATGTTTATCACCTGTACTGTACAGTTCCTGAAAACTAGTTGATTCAGATGCAGCAGCCTGCAGTTTGGTGAAGATGCACCTATGTGTCTCATATCTGTGTTCATTATGTACAGCCACTGTAAATAAAGTATCAGTACTCGCAGACAAGTGGGTGTATCTTTTTTTATCGTTTAATGTTTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252076.1 lncRNA downstream 41157 8445250 ~ 8450614 (-) True LOC122353969
TU118300 lncRNA downstream 265769 8218760 ~ 8226002 (-) True G79971
TU118301 lncRNA downstream 265769 8218760 ~ 8226002 (-) False G79971
TU118298 lncRNA downstream 273349 8218114 ~ 8218422 (-) True G79970
TU118297 lncRNA downstream 273721 8217743 ~ 8218050 (-) True G79969
TU118540 lncRNA upstream 11362 8508647 ~ 8535713 (-) True G80130
TU118559 lncRNA upstream 56131 8553416 ~ 8667800 (-) True LOC122353980
TU118584 lncRNA upstream 91804 8589089 ~ 8591007 (-) True G80144
TU118602 lncRNA upstream 169162 8666447 ~ 8676813 (-) True G80158
XR_006252082.1 lncRNA upstream 171971 8669256 ~ 8683250 (-) True LOC122353992
XM_043251899.1 mRNA downstream 46875 8435583 ~ 8444896 (-) False parapinopsinb
XM_043251898.1 mRNA downstream 51161 8435583 ~ 8440610 (-) True parapinopsinb
XM_043252727.1 mRNA downstream 150986 8323592 ~ 8340785 (-) True tkta
XM_043251624.1 mRNA downstream 172882 8306278 ~ 8318889 (-) True bicd2
XM_043251625.1 mRNA downstream 172883 8306278 ~ 8318888 (-) False bicd2
XM_043251568.1 mRNA upstream 1922 8499207 ~ 8503366 (-) True LOC122353695
XM_043251569.1 mRNA upstream 2018 8499303 ~ 8503366 (-) False LOC122353695
XM_043252811.1 mRNA upstream 11374 8508659 ~ 8520020 (-) False LOC122354572
XM_043252810.1 mRNA upstream 11374 8508659 ~ 8520020 (-) False LOC122354572
XM_043252812.1 mRNA upstream 35488 8532773 ~ 8538544 (-) True LOC122354573
TU118295 other downstream 295386 8195818 ~ 8196385 (-) True G79967
TU118263 other downstream 348151 8092400 ~ 8143620 (-) True G79947
TU118247 other downstream 456238 8028606 ~ 8035533 (-) False snrpe
TU118246 other downstream 456238 8033930 ~ 8035533 (-) True snrpe
XR_006252105.1 other downstream 1055300 7374354 ~ 7436471 (-) False LOC122354401
XR_006252128.1 other upstream 11374 8508659 ~ 8520020 (-) False LOC122354572
XR_006252127.1 other upstream 11374 8508659 ~ 8520020 (-) False LOC122354572
XR_006252126.1 other upstream 11374 8508659 ~ 8520020 (-) True LOC122354572
XR_006252130.1 other upstream 36197 8533482 ~ 8538544 (-) False LOC122354573
XR_006252129.1 other upstream 36931 8534216 ~ 8538544 (-) False LOC122354573

Expression Profile