RNA id: XR_006252127.1


Basic Information

Item Value
RNA id XR_006252127.1
length 2374
RNA type transcript
GC content 0.37
exon number 8
gene id LOC122354572
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8508659 ~ 8520020 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGTGATGTTTCCTGTCGTCTGATGTACTACTTCCTAATTCTCCTATTGTGTGAGTATCGTCTTTGTTCTCCTTCTAGCGGAAATGAAGTTGTTCACCTTCGTTGTTTTGCATCTCCTGATGGATGTTCAGTCTCAAAaATCTCCTGCTGTAAAAGTATCTCCAGATGTCATAAGAGAGTCCAGCACAGTGAAGATCATCTGTGAGACATCAGAACGTGTGGATCAGTGTTATTTCTACACAAACAGAGAAGTGAAGAATATAAATGTCAGTTCATCGTGTGAGCTGGATCTCACTGGTGCTGAAGTGCTCAGATGGGCAGCTGTGAAATCACCTGAATCAATAGATATTTACTGTTACTTTACAATAGAAAACCACGGTATACACAAACCATCATCTCATTCTACTCCTGCTACAGTGACTGTGTTGGATTcacttcagaaaccctccaTTGGTGTTAATGAAGATCAGGACATTATATCATGTGAAATACCCCTCTCAGTCGAAGCTGATTTCATCTGTAGCTTCTACACTGAAGATGGTGGTCTTCTGTGTCAGCGTGTCTCTCAGAGGAGTTCGTCTGGAGAGAAAAGTCACTGTATGTATTACTTAAGTCATAGTGAACTCTTCACACGATCAGTGAACAGGAGACGGCTGAGCTGTGTTTATTCCTCCAAGACTGAACCTGAGATCAGATCCCCACACAGTGACACGATCACCTTGAAAGGTCTTCCTCTGGCCAGGTTGTCAGCATCTGCTTCAGTTATTCTGGAAACAGACACAGTTCAGCTGAGTTGTGAGAATACTGAAGATCTGAAGATGAATATGTGTTACTTTTACataaatgaaagacaaaataactcaaaaccgAACTCATCATGTAAGCTTTCACTCACTGGATCTCAGATCAGTATTTGGTCGGGAGGTCAGAGCTCATCTGTGAGAATAATCTGCTTCTACACTGTGATGAACAAAGCGTCTCTTCATTCTGATCCAGTGACAGTCCAAATTTCACCATCAACCATCACTGAACAAACTACAACTACCATGAAAACCTCTTTAGCTGTAACAGCCACACAGTAAAACTCGTATCACATCACAGTCTGATGAACTGTTTTCACAGCCTCCTCCGCTCCGCCTGACTCAACCAGAGAGACTCAAACATACTCACGACTTCATTTCTGTCTGGACTCATAGGATTCATCTCTCTGTGCCTCTTTACCAGTTCTGACGTCTCCTTCCAGCTGGAAACAACATCGCTTTTAATGTTCTCTCTGTGCTCCTCGAAACATGGATGACTTGTTTACTTTCTTCACTTTTTACATCTCTGTCACTGACCTGTACATGTAGCTACAGCAAGAATTATATCATAGTGTTTAGTACAGTATTTAGctactgaattttttttaagcagtgaCAATCTGAATAATAGTAGCTGTATGTAATTAgcaaatgcatgctaataataataaagatgttggtgataataataatattttgtgatgaCGGCAAcaatattatcaataataataaaagttatagTAATAATAAGGTAATAATGACACAGAGTTTAGCATAGAAGTTTTggaatattgtatttatatagtcttttttttctgtttcttttaattaatttgattgttTACTGGATTTTTTGTGATGATATGTTTCATGAcggcagaacctgattttgctgagtttgacaTGTTCTTGGATCAATCTTTGTTGGCCATGGAACAACATTGAGATTAAAAGAAGATTGAGATTTAAAGAAGCAGTTTATAGTCTTTGTGAAGTTTAGACTTACAATCAATGTTTGGTGCTACATCAGTGtcattaaatttgattttaggCATAAGATTAGGTTTAAGTGTAGAGCTATGgtcaaaacaaaagtttttggattaaaatgttgtataagggtcaacaaaaatgttatttattcctagAGTGTCCTCTCTGTGTGAAGATACCTGTCAAACTCTGGCTCTTTAAGGAGAGATATGTTAAAGCTTCATCTACTGGTGTGTTTATGTAAATTAGCTGGATTCTGTATGAGTTATTGGAGCGTGGACACTGTTGATGGGTGGATTTTATATTCAGAGATATTTGATTGAGTTCCTGGTATATTGCAGTAGTTGTATtatgaacaatttttttgttgttgtttttttgtttgtttttgcttatcAAGATACATATTCCTCTGTTAAAAAATCAAGGGCTGAATATGAATGAGTGAACTTTGCTGATAATCAAATACTTATCATATGCTGATAAGCATTGCAGTATACTCTATTATTTCTCGTTTTGTAATGGATGGTAATCAAACTGGCAGACTAACATCTGTgaaggtttttaaataaatcgaATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252076.1 lncRNA downstream 58045 8445250 ~ 8450614 (-) True LOC122353969
TU118300 lncRNA downstream 282657 8218760 ~ 8226002 (-) True G79971
TU118301 lncRNA downstream 282657 8218760 ~ 8226002 (-) False G79971
TU118298 lncRNA downstream 290237 8218114 ~ 8218422 (-) True G79970
TU118297 lncRNA downstream 290609 8217743 ~ 8218050 (-) True G79969
TU118559 lncRNA upstream 33396 8553416 ~ 8667800 (-) True LOC122353980
TU118584 lncRNA upstream 69069 8589089 ~ 8591007 (-) True G80144
TU118602 lncRNA upstream 146427 8666447 ~ 8676813 (-) True G80158
XR_006252082.1 lncRNA upstream 149236 8669256 ~ 8683250 (-) True LOC122353992
XR_006252081.1 lncRNA upstream 150113 8670133 ~ 8675735 (-) True LOC122353991
XM_043251568.1 mRNA downstream 5293 8499207 ~ 8503366 (-) True LOC122353695
XM_043251569.1 mRNA downstream 5293 8499303 ~ 8503366 (-) False LOC122353695
XM_043251567.1 mRNA downstream 11374 8491771 ~ 8497285 (-) True LOC122353694
XM_043251899.1 mRNA downstream 63763 8435583 ~ 8444896 (-) False parapinopsinb
XM_043252812.1 mRNA upstream 12753 8532773 ~ 8538544 (-) True LOC122354573
XM_043252814.1 mRNA upstream 12760 8532780 ~ 8538544 (-) False LOC122354573
XM_043252813.1 mRNA upstream 12760 8532780 ~ 8538544 (-) False LOC122354573
XM_043251927.1 mRNA upstream 24432 8544452 ~ 8550560 (-) True LOC122353982
XM_043251926.1 mRNA upstream 24432 8544452 ~ 8550556 (-) False LOC122353982
TU118535 other downstream 11374 8496188 ~ 8497285 (-) False LOC122353694
TU118295 other downstream 312274 8195818 ~ 8196385 (-) True G79967
TU118263 other downstream 365039 8092400 ~ 8143620 (-) True G79947
TU118247 other downstream 473126 8028606 ~ 8035533 (-) False snrpe
XR_006252130.1 other upstream 13462 8533482 ~ 8538544 (-) False LOC122354573
XR_006252129.1 other upstream 14196 8534216 ~ 8538544 (-) False LOC122354573
TU118561 other upstream 33396 8553416 ~ 8666340 (-) False LOC122353980
TU118567 other upstream 33396 8553416 ~ 8666340 (-) False LOC122353980
TU118562 other upstream 41564 8561584 ~ 8667800 (-) False LOC122353980

Expression Profile