RNA id: XR_006252081.1


Basic Information

Item Value
RNA id XR_006252081.1
length 533
lncRNA type inter_gene
GC content 0.38
exon number 9
gene id LOC122353991
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8670133 ~ 8675735 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACATTAAAGTTGTCTCTGATTCTGAAAATGGTGAATTTAGAGTTCTCTGTGAAATACCAGGATCAGATAACGTCTTGGATTATGAATTTTCAAATAATCTGAAGTCACTCGAGAATAAAGTAGTGAGCTGCAGTTATTCTTCAAAAAACACACCATCCAAACTATCATATAGTGACAAGTTCAACATAACAGATCTTTTTCCTGTAAAAATCCAGCCACCACAAACAACAAAGGGAACATTAACAGCTCTGGCTACAGAATCCAGTACTTGTTCTGAGACCACAACAGACCCTCCAACTGATCTTTTTCCTGTAAAAACTCAGGCACCACAAAAAACAAAGGGAACATTAAATTCAACATCAACTTTCTCCATAAATACTACAACAATAGAGTCAAAAACTCTGGCTACAGAATCCAGTAATGAGACCACAATAAACCCTCCAACTGAAACTACTCAGCCTTCACAAACCCTCAGTCTCTCAAGAGACACCATAACAAGCATATGGTTAATCATGGCCAGTGGAGTCATTGT

Function

GO:

id name namespace
GO:0005768 endosome cellular_component
GO:0044433 obsolete cytoplasmic vesicle part cellular_component
GO:0044440 obsolete endosomal part cellular_component
GO:0098588 bounding membrane of organelle cellular_component
GO:0010008 endosome membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118559 lncRNA downstream 2333 8553416 ~ 8667800 (-) True LOC122353980
TU118584 lncRNA downstream 79126 8589089 ~ 8591007 (-) True G80144
TU118540 lncRNA downstream 134420 8508647 ~ 8535713 (-) True G80130
XR_006252076.1 lncRNA downstream 219519 8445250 ~ 8450614 (-) True LOC122353969
TU118300 lncRNA downstream 444131 8218760 ~ 8226002 (-) True G79971
TU118661 lncRNA upstream 158356 8834091 ~ 8834625 (-) True G80202
TU118664 lncRNA upstream 171785 8847520 ~ 8850183 (-) True G80205
TU118680 lncRNA upstream 238738 8914473 ~ 8915970 (-) True G80218
TU118684 lncRNA upstream 311890 8987625 ~ 8994007 (-) True G80222
TU118713 lncRNA upstream 464052 9139787 ~ 9141913 (-) True G80249
XM_043251924.1 mRNA downstream 13339 8649454 ~ 8656794 (-) False LOC122353979
XM_043251922.1 mRNA downstream 13342 8649454 ~ 8656791 (-) True LOC122353979
XM_043251923.1 mRNA downstream 13343 8649454 ~ 8656790 (-) False LOC122353979
XM_043251921.1 mRNA downstream 13344 8649454 ~ 8656789 (-) False LOC122353979
XM_043251930.1 mRNA downstream 81145 8579237 ~ 8588988 (-) True LOC122353983
XM_043251934.1 mRNA upstream 20715 8696450 ~ 8700757 (-) False LOC122353984
XM_043251932.1 mRNA upstream 20715 8696450 ~ 8700757 (-) False LOC122353984
XM_043251933.1 mRNA upstream 20715 8696450 ~ 8700757 (-) False LOC122353984
XM_043251935.1 mRNA upstream 20715 8696450 ~ 8700757 (-) False LOC122353984
XM_043251931.1 mRNA upstream 20715 8696450 ~ 8700757 (-) True LOC122353984
TU118562 other downstream 2333 8561584 ~ 8667800 (-) False LOC122353980
TU118561 other downstream 3793 8553416 ~ 8666340 (-) False LOC122353980
TU118567 other downstream 3793 8553416 ~ 8666340 (-) False LOC122353980
XR_006252130.1 other downstream 131589 8533482 ~ 8538544 (-) False LOC122354573
XR_006252079.1 other upstream 20715 8696450 ~ 8700757 (-) False LOC122353984
XR_006252078.1 other upstream 21429 8697164 ~ 8700757 (-) False LOC122353984
XR_006252030.1 other upstream 1224442 9900177 ~ 9961124 (-) False cntnap5l
TU119173 other upstream 1569867 10245602 ~ 10254848 (-) True G80581
unassigned_transcript_1802 other upstream 1583460 10259195 ~ 10259266 (-) True trnaq-cug_19

Expression Profile