RNA id: XR_006252079.1


Basic Information

Item Value
RNA id XR_006252079.1
length 1479
RNA type transcript
GC content 0.39
exon number 11
gene id LOC122353984
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8696450 ~ 8700757 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGAACCTACCCGTTTCTGGAAgctgatttttacttttattttttttacttgtgtgGTCAGTTTTTCAGTTCTGATCTCATTCTAAAACTGATACATGTGCCTGCAGACATTGTGAGATGGCCATGCTCATCTTCATAATCTTTCATCTTTTCCTGGAGATTAAATCACAAGGTTTTCCACAGGCCAAGCTGACAATATTTCCAACATTTGCCGTTGATGAAGAAAAGGTGCAGATGATCTGTGAAGGTCAGGAGAACCAACATATATCTGAGTGCATGTTTTACCCTGTAGGACAGGAGCAATTTATACAACCGGTTACATCATGTAAGCTTTCCCTTACCGGTGCCGAACTGATCTCATGGTCACGAGATCAGGAGAGTTCACATGTTAACATATCCTGCTACTACAGCATaggaaaaaatgaaacatcaCCTCATTCCGACAGAGTCTCAGTTAGGGTCAGAGGTTTGGCCACCACGTCATCTTTGCCCCCAACCACAGAGGGCAGCCCAACTACTACGACCCCCAATGAAACCATTCAAGgAAATTCATCCACTGAGCCAACATCGAACACAGCACTAGGTTTGGCTGTAACATCCAGTGCTGAAATCGTAACAGATTCAATAACCACACCCTTTGAATCGACTACGCTCACTGATGCTACAGAACATGCATCAGATTTTTCTTTACTGAAGGCACTTTTTTCCTTACTGAAGGCACTGACTTCAAAAAGTACTCGAATACAAaaatgtttttctccatTGCTGCGGTCGCAAGCGGTGCAGGAATTTTACTGACTGTACTTGTGAGCATCTGTTTGTACGGATGTACACGAAAGTCAAAGGCAGAGAGCCTGCAGAAGAAGATGTAGTGATTTATTCAACCCTGAACTTCACACAACCCCCTTCACAACCACTAGGTATCAGCGACAGCAGGAGTGTTTACAGTCAGCTGAAGCTCCGCTGAAAGAATCAAACTCTGCCTGCTACTGTTTTATTGCAGGTCAGAGATAATCAATCAGAACTTTAAACTAGATTTAATCCTTTATATAGCGAATGccttttattgtaaatgttattgtAACTTCTGCTACGTAATGTCATTATcttaacctttaaaaaaagtgtgtcaTGAAGATCTGTCTGGTTTTGGATTACTAGTTTTACACATACAGTAGGGTCACAGCATTAATATGCAAACCTTTAAGCAATAATAATCACCTTACAATTGTTATACTGTGTTATTGTGGATGGCCCTTGTATTGATGATCATATTTTATCCCGTTGCTTTGTGTGTGAATATTATTACCCGATGTTCATTATTTAAAGCACCTCATTTTATCTCACTGCAAACAGACAGGattaaaaaattcagctttgccatcacaggaataaagtatattaagattttaaattggaataatatttcacaatgttgtatttgttaacaaataaatgcaaacctAGTGAGcaagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252082.1 lncRNA downstream 13200 8669256 ~ 8683250 (-) True LOC122353992
TU118602 lncRNA downstream 19637 8666447 ~ 8676813 (-) True G80158
XR_006252081.1 lncRNA downstream 20715 8670133 ~ 8675735 (-) True LOC122353991
TU118559 lncRNA downstream 28650 8553416 ~ 8667800 (-) True LOC122353980
TU118584 lncRNA downstream 105443 8589089 ~ 8591007 (-) True G80144
TU118661 lncRNA upstream 133334 8834091 ~ 8834625 (-) True G80202
TU118664 lncRNA upstream 146763 8847520 ~ 8850183 (-) True G80205
TU118680 lncRNA upstream 213716 8914473 ~ 8915970 (-) True G80218
TU118684 lncRNA upstream 286868 8987625 ~ 8994007 (-) True G80222
TU118713 lncRNA upstream 439030 9139787 ~ 9141913 (-) True G80249
XM_043251924.1 mRNA downstream 39656 8649454 ~ 8656794 (-) False LOC122353979
XM_043251922.1 mRNA downstream 39659 8649454 ~ 8656791 (-) True LOC122353979
XM_043251923.1 mRNA downstream 39660 8649454 ~ 8656790 (-) False LOC122353979
XM_043251921.1 mRNA downstream 39661 8649454 ~ 8656789 (-) False LOC122353979
XM_043251930.1 mRNA downstream 107462 8579237 ~ 8588988 (-) True LOC122353983
XM_043252538.1 mRNA upstream 2618 8703375 ~ 8707985 (-) True ldlrad2
XM_043251939.1 mRNA upstream 29073 8729830 ~ 8734728 (-) True LOC122353986
XM_043251697.1 mRNA upstream 34620 8735377 ~ 8743885 (-) True atxn7l2a
XM_043251699.1 mRNA upstream 43884 8744641 ~ 8752351 (-) True sypl2a
XM_043252558.1 mRNA upstream 85844 8786601 ~ 8789971 (-) True zgc:172270
TU118562 other downstream 28650 8561584 ~ 8667800 (-) False LOC122353980
TU118561 other downstream 30110 8553416 ~ 8666340 (-) False LOC122353980
TU118567 other downstream 30110 8553416 ~ 8666340 (-) False LOC122353980
XR_006252130.1 other downstream 157906 8533482 ~ 8538544 (-) False LOC122354573
XR_006252129.1 other downstream 157906 8534216 ~ 8538544 (-) False LOC122354573
XR_006252030.1 other upstream 1199420 9900177 ~ 9961124 (-) False cntnap5l
TU119173 other upstream 1544845 10245602 ~ 10254848 (-) True G80581
unassigned_transcript_1802 other upstream 1558438 10259195 ~ 10259266 (-) True trnaq-cug_19
TU119689 other upstream 2050483 10751240 ~ 10751988 (-) False LOC122354283
TU119698 other upstream 2056018 10756775 ~ 10758293 (-) False LOC122354283

Expression Profile