RNA id: XM_043251627.1


Basic Information

Item Value
RNA id XM_043251627.1
length 1753
RNA type mRNA
GC content 0.40
exon number 6
gene id card19
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8302109 ~ 8305499 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGACTTTTCCCTCATTTTGGTCGGAACTTCCGGTAATTCTCACCGAGGTCCCCGCCCCTCCACATACAATGCAATGGGCGTTTCCAAACAAAAGACAGCAGAGGGCACTTCAAAATGGGAGAGAGCTTCTACGAACAGCTGCGAATAGACAGCCGCTTCCTGAAAACAGATCAGCGACTGGATACAGAACTGGTGGATAAACTCATCCTGCAGCTCAACAGAATCTACCCGCAGATCCTGAATGACAAGGAGGCCTCCAAGTTCAGGGATTTGGATGTGCCCACCTGTATCAGGCTGGCGGAGCTGCTGAATCATCTACAGGAGAAAGGAGAGGAGGCATGTCGAGAGTTTTACCGAGCTCTGCACCTCCACGTGGAGGACGTTTATTTCAGTTTACCCACACGCCTCCGACTCAGAGaGTCTGGTGAACCAGTCGGCCCAATCCCAAATCCCAAGGACAGATATGTAATGAATGACCACAGTCCGTTTTTCTTCCTTAGTTGTTTCAGTGTGGCTGTAGGAGCAGCTCTGCTATATTACTACGGTGAGTCCAAGCAGGTGTCAGGCTCCAGCAGCGCTCTGGGTCTGGCTGCGATGGGTCTGAGCAGGAAAGTGAGGGACGTTCTCATCTGGTACACAGACGATGGAAAGTGACGGCTTTCGTGCTGCCTTCAAAAAGAATTGAGACATGGCAATTGATTCTGAAAACTCCGTTGCCcttgtcaaaaaatatttaaattcaggtttttaaaaagatgtacATACTATGTATACAGAGAGATTGTTGTTCAGCATTAGAACGGTCGAATGTCCAAAGATTGAACTTTTGGGTTTCATGGGTAAAGGCCATTGCACACGtagtcatttacattttttatccgTCATCCTTTTCATCAAAATGCATGTTACGGatgtgaaaatgcagaaaaatcgaacctggctttttaattttttaagacGGACGAAAGTTTGTAAACATGATTGAATGGTTCAATTAACTAGAAATGGTGTGAAATGACCTTTAATCTAGAATCTCTTAGTTACGATTTTAAATATAACGATATAACGGTTTATATAACTGCTTAACAATTTTGATCAAACATTACAGTCATTGAAATAATAGCCATTTATACATAAGGGCAGGAACTCAGAAAAGTTGGATAGGAACCAAACTTGCTGCTTGCACTTAAGTATTCAGTTAGAGTTGCTGAGaagttgttttttgtgtatttgttttattgtactttaATATAGACGTCAAACTCATTATTTATAGTCCGTATCCTTCCATTCTTACAGACTTGGGACTTGCCTAGAGATTATTGTAGTAAAATGTTGGCACAGATTATAATTCACTACGCCGTTTAGTACATGCAGAACTGGGTAAACTTGACAAATCAAATAGATCAACATGTcagaatatttttacaaatattacaggTAACCTTAAAGTCCAGTACCTTGGAGTATTAGGAGCTTGTTACTTTGTAATACCTTTTTTGTGGACTAAGATTTcaacaaatatatgtttatattgtttgtttacttttatacTAGCAGCATGTTTGTACTGGTTTGTgtactaataattaatattgtcaATTTTACTCGTGGCCTTGTTTCTGCAGtgcaattataaatgttttgtaaaactttTGGCCTGGAAACCTTTGCTGATGGAGTAGTTAACTGagaaaatagatatttttgGTGGTTGAAAAATGATTGGGCTAAATAAAACTGTGGAACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118300 lncRNA downstream 76107 8218760 ~ 8226002 (-) True G79971
TU118301 lncRNA downstream 76107 8218760 ~ 8226002 (-) False G79971
TU118298 lncRNA downstream 83687 8218114 ~ 8218422 (-) True G79970
TU118297 lncRNA downstream 84059 8217743 ~ 8218050 (-) True G79969
TU118296 lncRNA downstream 97874 8203395 ~ 8204235 (-) True G79968
XR_006252076.1 lncRNA upstream 139751 8445250 ~ 8450614 (-) True LOC122353969
TU118540 lncRNA upstream 203148 8508647 ~ 8535713 (-) True G80130
TU118559 lncRNA upstream 247917 8553416 ~ 8667800 (-) True LOC122353980
TU118584 lncRNA upstream 283590 8589089 ~ 8591007 (-) True G80144
TU118602 lncRNA upstream 360948 8666447 ~ 8676813 (-) True G80158
XM_043251619.1 mRNA downstream 9124 8270194 ~ 8292985 (-) False wnk2
XM_043251621.1 mRNA downstream 9125 8270194 ~ 8292984 (-) False wnk2
XM_043251622.1 mRNA downstream 9125 8270194 ~ 8292984 (-) False wnk2
XM_043251620.1 mRNA downstream 9125 8270194 ~ 8292984 (-) False wnk2
XM_043251617.1 mRNA downstream 9125 8270194 ~ 8292984 (-) True wnk2
XM_043251624.1 mRNA upstream 779 8306278 ~ 8318889 (-) True bicd2
XM_043251625.1 mRNA upstream 779 8306278 ~ 8318888 (-) False bicd2
XM_043252727.1 mRNA upstream 18093 8323592 ~ 8340785 (-) True tkta
XM_043251899.1 mRNA upstream 130084 8435583 ~ 8444896 (-) False parapinopsinb
XM_043251898.1 mRNA upstream 130084 8435583 ~ 8440610 (-) True parapinopsinb
TU118295 other downstream 105724 8195818 ~ 8196385 (-) True G79967
TU118263 other downstream 158489 8092400 ~ 8143620 (-) True G79947
TU118247 other downstream 266576 8028606 ~ 8035533 (-) False snrpe
TU118246 other downstream 266576 8033930 ~ 8035533 (-) True snrpe
XR_006252105.1 other downstream 865638 7374354 ~ 7436471 (-) False LOC122354401
TU118535 other upstream 190689 8496188 ~ 8497285 (-) False LOC122353694
XR_006252128.1 other upstream 203160 8508659 ~ 8520020 (-) False LOC122354572
XR_006252127.1 other upstream 203160 8508659 ~ 8520020 (-) False LOC122354572
XR_006252126.1 other upstream 203160 8508659 ~ 8520020 (-) True LOC122354572
XR_006252130.1 other upstream 227983 8533482 ~ 8538544 (-) False LOC122354573

Expression Profile